| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0298 |
|---|
| Symbol | |
|---|
| ID | 5609750 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | - |
|---|
| Start bp | 351912 |
|---|
| End bp | 353438 |
|---|
| Gene Length | 1527 bp |
|---|
| Protein Length | 508 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 640931130 |
|---|
| Product | putative flavoprotein subunit of a reductase |
|---|
| Protein accession | YP_001472039 |
|---|
| Protein GI | 157373439 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1053] Succinate dehydrogenase/fumarate reductase, flavoprotein subunit |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 4 |
|---|
| Fosmid unclonability p-value | 0.00000145919 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAACAAAC TTTCCATGGC AATTGCTTTG AGCTTATTAA GCGCGAGCAG TTATGCGGCA
AATTACACCA AAAATGTCGA TGTGGTTGTA ATTGGCTCCG GCGCCAGTGG TATGGCAGCC
GCGGCTGCCG CCGAAGAAAA AGGTCTGACA ACCGTACTGT TAGAGAAGCA AGCGAACATC
GGTGGTTCGG CGCTCTATAT CGAAGGTACT TTCGCCGTTG AAACTGAACA GCAAAAATCG
ATGTACATTG GCCTGACCAA AGACTGGGCT TATAAGAACC ATATGGAATT CAACCATGGT
TTTATCAACG GTCCCTTAAT GCGCAAATGG ATTAATCGTT CAGACGAGTC TATCAAATGG
ATGGAAGAGA AAGGCGTCAC CTTCCATGAC GTGCGCACCC TCTTCGAAGA CGGTAACCGT
ACCTGGCACA TCTTTAAAGA TGGTAAAGGC GTCGAGTTCG TGCAGAAGAT GGAGCAGTCT
TTCACCAAGA ACGGCGGTAA GATCTACACG GAAACACCGG CAACTGAGCT TGTCTATAAA
GACGGAAAAG TGGTCGGTGT TATCGCCGAA GATGGCGAAG GCGATACCTA TACCTTTAAC
GCTAAGGGCG GTGTCATCGT TGCTACTGGT GGCTTCATCA ACAACCCTAA GATGTTAAAA
AAATTCGGTA TCCGCACCGA CCACCTGATT GTAGGTCCTA AAAAGGGTCG TGATGGCGAC
AGTATCAAGT GGTGGGAAGA GACAGGCGCA AGACTGGAAG GTATGAAGAC CCATCTGGCA
ATCGGCGCAT GGTTATATGG CAAAGATCCA AACACTCAGC TAAGTCACCC GGAGCATACG
ACAGTCTATT CACAGATGGC CTCTCTATTA CGCCAGCCAT ACATGTGGGT TGCTAAAGAC
GGTAAGCGTT TCATCGATGA AAGCCAGGCG CCACTATGGC ACAACACAGG CCCTGCGGTA
GAACGTGTGG GTAATGGCTA CTTCGCCGTC TTCGATGACA ACATGAGAGA GTACATGAAG
ACAGATGGTA TCGACATCTC TCACAGTGAC TGGGTGCGTG TTGGTCATAA GCTCGACTTG
CTGGACGAGG GTATCGAAGT CGGCCAAAAA GAGGGTTGGT TAGTTAAATC AAACACCATC
GAAGGTCTGG CTAAAAAGAT GGGGATTGAT GTAGCCACCT TTAAGCAAAC AGTGGTTGAC
GCCAACCGTT ATGCCATCAA CGGTGTAGAT GAAGAGTTCC CTAAAAACCG CAAGTACGTT
CGTTCTATGG ACAAGCCTCC TTACTTTGCC GTTAAAGGTC AAAACGCCAC GCTAATCACC
CTCGGTGGCC CAACCACCGA CACCGATATG CAGGTTCTGC GTGAGAAAGA TATGAAGCCT
GTTGGCGGCC TATATGTTGT AGGTTGCGAA GTGGGCGGCG TATATGGTGA TTCATATAAC
CTGACTCTTG AGGGTATGGC CAGCTCATTC GCCATCAACT CGGGTCGTTT CGCTGCCGAG
CACATCGCAC AGAAGATGAA GCTGTAG
|
|---|
| Protein sequence | MNKLSMAIAL SLLSASSYAA NYTKNVDVVV IGSGASGMAA AAAAEEKGLT TVLLEKQANI
GGSALYIEGT FAVETEQQKS MYIGLTKDWA YKNHMEFNHG FINGPLMRKW INRSDESIKW
MEEKGVTFHD VRTLFEDGNR TWHIFKDGKG VEFVQKMEQS FTKNGGKIYT ETPATELVYK
DGKVVGVIAE DGEGDTYTFN AKGGVIVATG GFINNPKMLK KFGIRTDHLI VGPKKGRDGD
SIKWWEETGA RLEGMKTHLA IGAWLYGKDP NTQLSHPEHT TVYSQMASLL RQPYMWVAKD
GKRFIDESQA PLWHNTGPAV ERVGNGYFAV FDDNMREYMK TDGIDISHSD WVRVGHKLDL
LDEGIEVGQK EGWLVKSNTI EGLAKKMGID VATFKQTVVD ANRYAINGVD EEFPKNRKYV
RSMDKPPYFA VKGQNATLIT LGGPTTDTDM QVLREKDMKP VGGLYVVGCE VGGVYGDSYN
LTLEGMASSF AINSGRFAAE HIAQKMKL
|
|---|
| |