| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0239 |
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| Symbol | |
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| ID | 5614165 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 275085 |
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| End bp | 276050 |
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| Gene Length | 966 bp |
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| Protein Length | 321 aa |
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| Translation table | 11 |
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| GC content | 39% |
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| IMG OID | 640931065 |
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| Product | LysR family transcriptional regulator |
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| Protein accession | YP_001471980 |
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| Protein GI | 157373380 |
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| COG category | [K] Transcription |
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| COG ID | [COG0583] Transcriptional regulator |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 47 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGGGATA TAACTTTTAG TGACTTGGAT TTATTGAGTT TAAATATACT GGTTAATCTC
TATGAGAGTA AATCGGCAAC TTCTGTATCT CACAAGTTAA ACATTCCCGC ACCGAAAATT
AGTCGATGCC TCAAGCATGC CAGAGAGCTC TTTGGTAATG AGCTATTTAT CAGAAAAAAA
TATGGCTTGG TACCGAATGA ATTCGCAGGA AAAATTTATC CAATTGCGAA GGAAATTGTA
GAATGTTCGA AAAGCTTGCA AAAGCTACAC TGTGAAAATA GTGTCGAACT AGCTCACCAT
TTTGAAATAG CCTCACCAGA CCTTATCTCC TACACATTCC CAAAGGTACT ATTAACCTCT
ATTAGGAATG CAGGAAAAGA TATGAGCTTT AATATCTCAA CCTGCACAAG AAAATCAATA
GATAGTATCG TCACCGGTGA AATTGATATA GGCCTCTGCT GCTGTAATAT TATTGATGAC
ATCAAGAATA TTGATGAGAA TCTCGAAGCC ATACCATTAA AAAAACTGAA TAAACTCTTT
CTCATCTGTC ACCATGAACA TCCAATACTC AAGCAAGAGA TCACCTTAGA ATCTATTGCA
GCGTATCCGT TTGTTAACGT GAATGTTGAT GACACCAAAC AAAAAAGGAG TCCATTTCAA
GCGTATTGCG ATGCAAACAA CATCCAACTT AACACAGAGA TGGATCTCAG CAGTCTATCC
GGCATATTTG AATACCTGAG ATCGACCCAA GCCGTTGCCT TGCTCCCCTA CAGTTCGATA
TATAACATGA TAAACAGTAC CCATAACCTG CATGCTTGTC GGATTTCAGA TGTCGAGTCA
GAGCGACTCT ATATGCAAAT CAAAGTGCCA ACTTTATATC TGGTTTACAA TAAAGCCAAA
GCAGATCCTA ATCTGCAATG GTTATCGACT CAAATTCAAG ACTTAGTCAA CACCGCACTG
CACTGA
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| Protein sequence | MRDITFSDLD LLSLNILVNL YESKSATSVS HKLNIPAPKI SRCLKHAREL FGNELFIRKK
YGLVPNEFAG KIYPIAKEIV ECSKSLQKLH CENSVELAHH FEIASPDLIS YTFPKVLLTS
IRNAGKDMSF NISTCTRKSI DSIVTGEIDI GLCCCNIIDD IKNIDENLEA IPLKKLNKLF
LICHHEHPIL KQEITLESIA AYPFVNVNVD DTKQKRSPFQ AYCDANNIQL NTEMDLSSLS
GIFEYLRSTQ AVALLPYSSI YNMINSTHNL HACRISDVES ERLYMQIKVP TLYLVYNKAK
ADPNLQWLST QIQDLVNTAL H
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