| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0238 |
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| Symbol | |
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| ID | 5614070 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 273869 |
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| End bp | 274867 |
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| Gene Length | 999 bp |
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| Protein Length | 332 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 640931064 |
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| Product | transcriptional regulator-like protein |
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| Protein accession | YP_001471979 |
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| Protein GI | 157373379 |
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| COG category | [K] Transcription |
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| COG ID | [COG0583] Transcriptional regulator |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 47 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGAAAGG AACTCTCTAG GTTAGATTAT TTCACTCTTA AAGTGCTCAT CGGTTTATTT
GAGTTTAAGA GTTGCAGTGT CGTGGCTGAG AAACTAAATA CAACTCAGCC TAAAGTCAGC
CGCGCCTTGA GCTGTCTCCG TGAAGTGATC CAGAATGAAT TATTTGTGCG TCAGCAGTAT
GGCTTACAGC CAAATTCGAT GGCCGAAAAA ATCTATCCCC TGGCTAAATC GATAGTCGCT
ACACTGGAAG AGATAGACCT TGTGGCTATG AGTGAACCGG ATACGAGACG TGTCGTAAAT
GTCGCGGTTC AGGAGCATAT GTCTGCATTT TTTTTGGAGG CAATATCGGA AGCCAGCGTT
CATTTGAACC AGGAAGTAGT CGTCAATGTT CAGTCCTGGT GTGACAATGT TTCCCAGCTG
ATTGCTCAGG GCAAGCTTGA CTATGCGATT ACAGTCAATT CAACTTACCA CGAGATGATA
GAAAACCTCG AACTGGGGGA GGTGCGTTAT CGGTTCGTCG TCGCCAAGAA AGGTCATCCC
ATTTTTCGAA AGCCCCTGAG CTACTCAGGG CTTATCGAGA ATCGACTGGT TTTCATCAAT
TACTGCCAAG TGGGCTCGAA GCCTAACTGG TTCGAATCCA GTGTGAAGCT GCGGGGTGAG
GAATTAAAGC TAACCTTAAA GACCTCTAGT CTCAACATGG CGCTGGATCA TATCGTTAAA
TCCGATGATG TGTGTTGTAC TGCATCCATT TTTGCCTATC AAAATTTTAA GAATCGTGAT
GATACTGACT TTTTCGATGC CACAGACTTC AGTCATGTTG AGTTAGCTAA GGCTAAAAAA
GAGTTGGCGC CGGCAGAGCA TCAAAAAGAT TATTATTACC TGCAATATCA TCATTCTAAT
GAGCATGAAT TTACTCATCT TTTGTCGGAA ATAATGAAGC GTAAACTTGA CTTGATGCAA
GACGAATATG AACAAGCTAA ATCACTCGTC GCGAGCTAA
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| Protein sequence | MRKELSRLDY FTLKVLIGLF EFKSCSVVAE KLNTTQPKVS RALSCLREVI QNELFVRQQY
GLQPNSMAEK IYPLAKSIVA TLEEIDLVAM SEPDTRRVVN VAVQEHMSAF FLEAISEASV
HLNQEVVVNV QSWCDNVSQL IAQGKLDYAI TVNSTYHEMI ENLELGEVRY RFVVAKKGHP
IFRKPLSYSG LIENRLVFIN YCQVGSKPNW FESSVKLRGE ELKLTLKTSS LNMALDHIVK
SDDVCCTASI FAYQNFKNRD DTDFFDATDF SHVELAKAKK ELAPAEHQKD YYYLQYHHSN
EHEFTHLLSE IMKRKLDLMQ DEYEQAKSLV AS
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