| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0171 |
|---|
| Symbol | |
|---|
| ID | 5610328 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | + |
|---|
| Start bp | 193063 |
|---|
| End bp | 194862 |
|---|
| Gene Length | 1800 bp |
|---|
| Protein Length | 599 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 640930997 |
|---|
| Product | thiamine pyrophosphate binding domain-containing protein |
|---|
| Protein accession | YP_001471912 |
|---|
| Protein GI | 157373312 |
|---|
| COG category | [G] Carbohydrate transport and metabolism
[H] Coenzyme transport and metabolism
[R] General function prediction only |
|---|
| COG ID | [COG3961] Pyruvate decarboxylase and related thiamine pyrophosphate-requiring enzymes |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 45 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGTCCCCGT CGATTAAAGA TAACTTTGGT AGTGAGTATT ACAACAGTTT GCCACTTTTT
GGCGACTGTC TGGGTGAGTT ATTGGCCTTT TTTGGGGTGA AACGAGCTTA TGGTGTCGGT
GGTGATTTTG TCGCAAACCT GATCAACTCA TTAGAGGGGC ATATCGAAGT GTTGCCCTCG
AGCAATGAGA TGCATGCCGG GTTTAGTGCC TGCGCTCAGG CTGAACTGAA TCCTCTGGGG
ATGTGTTTAA CGACCTATAC GGTCGGCAGT CTTCCGTGCG TGACGGCTGC CGCACTGGCG
AGAACCGAGG GCTTACCTGT GGTCTTTATC TCCGGTGCGC CCGGTGAGGC AGAGGTCAAT
AGCCATGCCC TGCACCATTC GGTACACCCA CATACTGCCT GGCATACGGA CCTCGATGCG
GCCTTAAACT CTTTTCGTGC TCTGGGTGTC AGAGCCGAGC GTCTTCAGGG GCAGAGACAT
AGCGGTCAGC CGAATATTGC CGCCGAACAG TGTTTGGAGT TGCTCACCTA TGCCTACCTG
AACCGCCAGC CGGTATTTAT CGAGATCCCA AGAGATCTGA TCAATCAGCC GACTCAATCT
CTGAGCCTGC CACTGAGTTT GGAGCAGATA TCACAGAATC AGCCACTTAG TTTGAGTGGT
GCCGAGCTGA TCGCCCAAGA TATCGAGTCA AAGCTCAAGC TGGCTAACAA GCCTTTGGTT
TTTTTGGGTG AGAAACTGAG GTTGAATCGC CCGCTACTCT CTAAAATTAT CTCATTGTGT
CATCAACATA GCTTGCCCTA TGCGACGAGT TGGTTCGGTA AGGGAATGCT GGATGAGAGT
GAGCCTCTCT GTTTAGGCAG TTATAACGGT GCCTTCAGTG AACTCGAGGG TAAGCATTAT
ATTGAATCTC AGGCCGACTA TATTTTGGAA TTAGGGACGG CAATATTTCC CTCGGATACC
AATAATGCAT TTAGCAGTCA GACCCATGCC ATAGACACCC ATAGCCATAA AACCATGTTG
CGAGGAACGG CGCGATGGGA GAAGGATATC GAGGCCGTTA TCGATCTTCT AGTGCAGAAG
TTACCGTTAA ATGAGGGGGC TGAAAGCACT CTGGATCCGG ATGAAAAAGT AACTCCGCCA
CTCGAGTCCG TTATGCTTGG TTATCATAAC TTAGCGGAGA CGATTAATCA GGCTCAGCGT
CAGCTTGCTA AGCCTTATAT CTTCGTGCCC GAAGTGGGGA GCTCTCTGTT TGCCAGCTTC
GAACTGGAGA CCCATGGAAG TGATATCGGC AGAAGCTATC TGGCCAACCC TTGGTATGCG
GCCATGGGGA CCTGTCTTCC TTACGCAAGA GCCATTGCGG ATCAACTTGC CGAAAGTAAC
AGCCTGCAGC CGGTATTAGT CATGATTGGG GATGGTGGTT TTAATTTTCA GGCTAATGAA
CTGATCAACC TGCAGAAGCA GGGCGCCAAT GTGACGATTC TCTATATGAG AAACAATATA
TTCCACCTGG GTAAGGCCGG TGATGCTCCT ATCTATTCCT GTAACGATCA AGGGTTTAAT
CCAAGATTAC TGATCCAGGC CTATGGGGGG GATGGGCATC TGTGTGAGAC AACAGAGCAA
CTCACTCACT GTCTGATTGA GACGGCTCAC AAGGGGGGAG TACACCTGAT CGAGGTTCCG
ACTTCCGTGG AGGCAGGGCA TCAGAGCGAG ACGACTAAGA AGCTTAACAC CTACATAGGC
TTTAGAAATG GCGATCCTCA GGCCACCGAG CGATGGAATG AGCTGTGTGG CCATTTCTGA
|
|---|
| Protein sequence | MSPSIKDNFG SEYYNSLPLF GDCLGELLAF FGVKRAYGVG GDFVANLINS LEGHIEVLPS
SNEMHAGFSA CAQAELNPLG MCLTTYTVGS LPCVTAAALA RTEGLPVVFI SGAPGEAEVN
SHALHHSVHP HTAWHTDLDA ALNSFRALGV RAERLQGQRH SGQPNIAAEQ CLELLTYAYL
NRQPVFIEIP RDLINQPTQS LSLPLSLEQI SQNQPLSLSG AELIAQDIES KLKLANKPLV
FLGEKLRLNR PLLSKIISLC HQHSLPYATS WFGKGMLDES EPLCLGSYNG AFSELEGKHY
IESQADYILE LGTAIFPSDT NNAFSSQTHA IDTHSHKTML RGTARWEKDI EAVIDLLVQK
LPLNEGAEST LDPDEKVTPP LESVMLGYHN LAETINQAQR QLAKPYIFVP EVGSSLFASF
ELETHGSDIG RSYLANPWYA AMGTCLPYAR AIADQLAESN SLQPVLVMIG DGGFNFQANE
LINLQKQGAN VTILYMRNNI FHLGKAGDAP IYSCNDQGFN PRLLIQAYGG DGHLCETTEQ
LTHCLIETAH KGGVHLIEVP TSVEAGHQSE TTKKLNTYIG FRNGDPQATE RWNELCGHF
|
|---|
| |