| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0106 |
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| Symbol | |
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| ID | 5612686 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 120074 |
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| End bp | 120943 |
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| Gene Length | 870 bp |
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| Protein Length | 289 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640930932 |
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| Product | dTDP-4-dehydrorhamnose reductase |
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| Protein accession | YP_001471847 |
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| Protein GI | 157373247 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1091] dTDP-4-dehydrorhamnose reductase |
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| TIGRFAM ID | [TIGR01214] dTDP-4-dehydrorhamnose reductase |
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Plasmid Coverage information |
| Num covering plasmid clones | 32 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACAAACT CAAGATTGAA GGTACTCATC TTAGGAAAAA GCGGTCAGCT TGCCCAAGCG
CTTATCGCCA ATAAACCCAC TCCTATCGAA TGCGTCGCAC TCGGGCACCT CGATATAAAC
TTAGCAGTTA CCGGTGAGAT AGAATCGGCT ATCACGACTA ACAGAGCGGA TATCATCATC
AATACAGCGG CCTATACTCA GGTCGACTTG GCCGAATCAG AGCCTTCATT AGCATTCGAA
ATCAATGCGC TTGCGGTAGA AAATATTGCG AAGGCGGCGC GAAATACCAA TGTCCATCTG
ATCCATCTCT CCACCGACTA TGTCTTCGAT GGAAAACAGA GTACTCCCTA CACCATCTTT
GATACCCCGC ACCCTATCAA TATCTATGGT GCCTCGAAGT TAACTGGTGA AAAAGCGCTT
CGACAATGTA TGCCAGTCGG GTCGACCACA GTGCGAACCT CATCGGTGTA TTCGCAATAT
GGCAATAACT TCGTTAAAAC CATGCTTAGA CTGATGCGTG AAAAGTCTGA GATAAAGGTG
ATATCGGATC AGATCAGCAG CCCGACCTCA GCCAAAGAGC TGGCACGCTT CCTATGGATG
CTCACAGAGC AAGAGTCACT GTCTCCCCTC TATCATTGGT GCGATAGTGG CAAGACCTCC
TGGTATCAAT TTGCCGTCAC GATTCAGCAG TTGGCTCTGA AGTATGGCAA GTTAGAGAAA
GCCATCTCGA TTATTCCCAT CTCATCCCAA GAGTATGGGG CTGCGGCGTT ACGCCCGCCG
TTCAGCCAGC TGGATATCGG TCAATCTCAA GCTCTGCTTC ACTCCAAACC CTGGCAGGAA
AACCTAGAGT CACTGATTAA GCGCCTCTAA
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| Protein sequence | MTNSRLKVLI LGKSGQLAQA LIANKPTPIE CVALGHLDIN LAVTGEIESA ITTNRADIII
NTAAYTQVDL AESEPSLAFE INALAVENIA KAARNTNVHL IHLSTDYVFD GKQSTPYTIF
DTPHPINIYG ASKLTGEKAL RQCMPVGSTT VRTSSVYSQY GNNFVKTMLR LMREKSEIKV
ISDQISSPTS AKELARFLWM LTEQESLSPL YHWCDSGKTS WYQFAVTIQQ LALKYGKLEK
AISIIPISSQ EYGAAALRPP FSQLDIGQSQ ALLHSKPWQE NLESLIKRL
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