| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0001 |
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| Symbol | trmE |
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| ID | 5612828 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 521 |
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| End bp | 1882 |
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| Gene Length | 1362 bp |
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| Protein Length | 453 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 640930824 |
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| Product | tRNA modification GTPase TrmE |
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| Protein accession | YP_001471742 |
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| Protein GI | 157373142 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0486] Predicted GTPase |
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| TIGRFAM ID | [TIGR00231] small GTP-binding protein domain
[TIGR00450] tRNA modification GTPase TrmE |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.201746 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 1 |
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| Fosmid unclonability p-value | 0.00000000323985 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGACAACAG ATACTATCGT GGCACAAGCA ACGGCCCCCG GGCGTGGTGG TGTGGGTATC
ATTCGTATCT CGGGCGATCA AGCCAGCGAA GTGGCGATGG CACTCCTTGG ACATATTCCA
AAGACCCGCT ATGCCGATTA CTGTGATTTT AAAGATGGTG AAGGTGAAGT GATCGATCAG
GGCATCGCCC TCTATTTCCA GGGACCTAAC TCCTTTACCG GTGAAGATGT ACTCGAACTT
CAGGGTCATG GCGGCCAGAT AGTTCTCGAT ATGTTGATCA AACGCGTGAT GGAAGTTGAA
GGGATCCGCA TCGCGAAACC CGGCGAATTC AGCGAACAGG CTTTCATGAA CGACAAGCTT
GACCTGACTC AGGCCGAAGC CATTGCCGAT CTGATCGATG CCACCAGCGA ACAAGCCGCT
AAAAGCGCCC TGAACTCACT GCAAGGTGAA TTCTCGACTC AGGTACACGA ACTTGTCGAT
CGGGTCACCA ACCTGCGCCT ATACGTCGAG GCGGCTATCG ATTTCCCCGA TGAAGAGGTG
GACTTTCTCT CTGATGGAAA AATTGCAGGC TCACTTTATC GCATCATCAC TAAGCTGGAC
TCTGTCCAGG CCAGTGCCAA GCAAGGTGCC ATTATCCGTG AAGGGATGAA AGTGGTGATT
GCCGGGCGTC CAAACGCCGG TAAATCCAGC CTCCTGAACG CCCTGGCCGG TAAAGAGTCG
GCGATTGTCA CCGAAATAGC GGGCACCACC CGAGATGTAT TGCGAGAACA TATCCATCTC
GATGGTATGC CACTGCACAT TATCGATACC GCAGGGCTTC GAGATACCGC AGACACAGTA
GAACAGATAG GCATCGAGCG TGCGTGGGCC GAAATTGAAA CCGCCGATCA GGTTTTGTTT
ATGGTCGATG GCACCACCAC CGATGCCGTC GATCCCCATG AAATCTGGCC AGACTTTATC
GACCGTCTAC CTGAGAAGTT AGGCATTACC GTTGTCCGTA ACAAGGCTGA TATCACAGGA
GAGGCACTCA CCGTCACTCA AGACCATGGC CACAATGTAT TCAGAATATC GGCCAAAACA
GGCTTAGGCG TCGAGGAGTT ACAGCAGCAC CTGAAATCTC TGATGGGCTA CCAGAGCAAC
CTTGAAGGTG GCTTTATCGC ACGACGTCGC CATTTAGAGG CCTTAGAGCT GGCCACCAGC
CACCTGATGA TAGGTAAAGA GCAGTTAGAG GTCTATCAAG CCGGTGAACT GTTAGCCGAA
GAGCTGCGTA TGACTCAAAT GGCGTTATCG GAAATAACGG GGAAATTTAC TTCCGATGAT
CTGCTTGGAA AGATCTTCAG CTCATTCTGT ATAGGGAAAT AA
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| Protein sequence | MTTDTIVAQA TAPGRGGVGI IRISGDQASE VAMALLGHIP KTRYADYCDF KDGEGEVIDQ
GIALYFQGPN SFTGEDVLEL QGHGGQIVLD MLIKRVMEVE GIRIAKPGEF SEQAFMNDKL
DLTQAEAIAD LIDATSEQAA KSALNSLQGE FSTQVHELVD RVTNLRLYVE AAIDFPDEEV
DFLSDGKIAG SLYRIITKLD SVQASAKQGA IIREGMKVVI AGRPNAGKSS LLNALAGKES
AIVTEIAGTT RDVLREHIHL DGMPLHIIDT AGLRDTADTV EQIGIERAWA EIETADQVLF
MVDGTTTDAV DPHEIWPDFI DRLPEKLGIT VVRNKADITG EALTVTQDHG HNVFRISAKT
GLGVEELQQH LKSLMGYQSN LEGGFIARRR HLEALELATS HLMIGKEQLE VYQAGELLAE
ELRMTQMALS EITGKFTSDD LLGKIFSSFC IGK
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