| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sros_0788 |
|---|
| Symbol | |
|---|
| ID | 8664060 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Streptosporangium roseum DSM 43021 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013595 |
|---|
| Strand | + |
|---|
| Start bp | 803884 |
|---|
| End bp | 804858 |
|---|
| Gene Length | 975 bp |
|---|
| Protein Length | 324 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | |
|---|
| Product | RNA polymerase sigma factor RpoD |
|---|
| Protein accession | YP_003336545 |
|---|
| Protein GI | 271962349 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.00984199 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 33 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGTCACTCG GTTCCACCCT CACCCAGACC GGCGACGAAG TCCTGACGCT CCTGAAGGCC
GAGATGGGCG CCACCGCCGA CCCGGTCAGG GACTACCTCC GGCAGATCGC CAGGATCCCC
CTGCTCACCG CCGGGCAGGA GGTCGAGCTG GCCCGGCGCG TCGAGGCGGG CCTGTTCGCC
CGGGAACGCC TCGGCGCCGA GGGACTCCCG GCGGCCCTGC GGGCCGAGCT GGAGTGCGTC
GCCGACGACG GCCGCCGCGC CAAGGACCGC TTCGTGGAGG CCAACCTGCG GCTGGTCGTC
TCGATCGCCA AGCGCCACGC CGGACGCGGT GTGCCCCTCC TGGACCTGAT CCAGGAGGGC
AACCTGGGCC TGATCCGCGC CGTCGAGAAG TTCGACCACA GGCTGGGGTT CAAGTTCTCC
ACCTACGCCA CCTGGTGGAT CAAGCAGGCG ATCACCCGGG CCATGGCCGA CCAGGCGCGG
ACCGTCCGCG TCCCGGTCCA CATGGTCGAA ATGATCAACA AGGTGGCCCG GGTGGAACGG
CAGCTCCTGT GCGACCTGGG CCGCGAGCCG ACGCCGGAGG AGATCGCGGC CGAGCTCGAC
CTGACTCCGG AGAAGGTCAC CGAGATCAAG GGCCACGGCC GCGAGCCGAT CTCCCTGCAC
ACGCCGCTCG GCGACGAGGG TGACAGCGAG CTCGGCGACC TGATCGAGGA CGCGGAGGCC
GTCACCCCGG AGGCGGCGGT CGCCTTCACC CTGCTCCAGG AGCAGGTGCG CGCGCTGCTC
GCCACGTTGA CCGGGCGGGA GGCGGGCGTG ATCTCGATGC GGTTCGGGTT CGCCGACGGC
AGGCCCTGGA CCCTGGACGA GATCGGCAGG GTCTACGGCC TCACCCGCGA ACGGATCCGC
CAGATCGAGT CCAAGACCAT GTCCCGACTC CGCCACCCCT CCCGGTCACA GCCCCTGCGC
GACTACCTGG GCTGA
|
|---|
| Protein sequence | MSLGSTLTQT GDEVLTLLKA EMGATADPVR DYLRQIARIP LLTAGQEVEL ARRVEAGLFA
RERLGAEGLP AALRAELECV ADDGRRAKDR FVEANLRLVV SIAKRHAGRG VPLLDLIQEG
NLGLIRAVEK FDHRLGFKFS TYATWWIKQA ITRAMADQAR TVRVPVHMVE MINKVARVER
QLLCDLGREP TPEEIAAELD LTPEKVTEIK GHGREPISLH TPLGDEGDSE LGDLIEDAEA
VTPEAAVAFT LLQEQVRALL ATLTGREAGV ISMRFGFADG RPWTLDEIGR VYGLTRERIR
QIESKTMSRL RHPSRSQPLR DYLG
|
|---|
| |