| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sputcn32_3986 |
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| Symbol | |
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| ID | 5081469 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella putrefaciens CN-32 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009438 |
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| Strand | + |
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| Start bp | 4634093 |
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| End bp | 4637155 |
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| Gene Length | 3063 bp |
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| Protein Length | 1020 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 640501198 |
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| Product | HsdR family type I site-specific deoxyribonuclease |
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| Protein accession | YP_001185488 |
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| Protein GI | 146295064 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0610] Type I site-specific restriction-modification system, R (restriction) subunit and related helicases |
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| TIGRFAM ID | [TIGR00348] type I site-specific deoxyribonuclease, HsdR family |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTTTAACG AACAAACCGT CACCGAAAAT GGAATTATCG ACCGCTTAAA GACTTTAGGC
GGTGTCAAAT GGATATGCTG CCACGGCGAG AACCTGCCCA AGCAAGCGCA GGATATCTTC
GTTGACGAGT GGCTAAAAGA CGCCTTGTGT TCGTTAAACC CCGATATTGC CAAACAGCCG
GATTACGCCG ATGAGGTGAT TTATAAGCTG CGTGGTGTGG TGCTGGAAGC GCGTCACACC
GGCTTGGCAA AAGCCAATGA GAACTTCCAT GAATGGTTAA TGGCCGAGAA AACCTTGCCT
TTTGGCGAGA ATGGCGACCA TATCACCATC AACCTCATTG ATTTCGACAA CATAGCCAAC
AACCACTTTG TGGTGGCCCA GCAGGTGCAC TATATCGCGG CGACCGAAGT CTATTTTGAT
ATTGTGCTCT ATGTAAACGG GATTCCCTTG GTTGTGGGTG AAGTGAAAAC CGCTACCCGC
CCCAGTGTCA CCTGGCAAGA TGGCGCCGCC GATTTTATGG GCGGTAAAAA GCACTACTGG
AAGAACGTCG AACCCTACTT TGTGCCCAAC CTGCTCTGTT TTGCCAGTGA AGGAAAGACC
TTTGCTTATG GCGCCATTAA CGCCCGGGTA AAAGATTGGG GCCCTTGGCA CAATACCGAC
CTGCGTGATG ACATTTTGCC CGGTTTGGCA TCGGTACTGG ACAGCTGTGA GGGCTTGTTA
AACCCGCAAA CCTTATTGCA GTTACTGGAA TCTTTCGCGC TGTTTTCAAC GGTGAAAACC
GGTAAAAACA CCCCACCCAA GCGCATTAAA ATTCTGCCGC GTTACCCACA GTTTGAAGCA
GCCAAGCAAA TAGTAGGCCG TGTGCGCAAA GGCTACCCCA AAAAAGGCCT GATCTGGCAT
TTCCAGGGTT CCGGTAAATC CTTATTGATG CTCTACGCCG CTAAAATGTT GCGTGGTGAC
AATACCCTAA AGAACCCCAC CGTATTGATT GTGGTTGATC GCCGCGACCT AGACACGCAA
ATTAGCGAAA CCTTTGGTGG TGCAGACGTT AAAAACCTTA TCAAGGTACA AAGCTGCAAA
AAACTCGGCC AACATATCGA GCAAGACAGC CGTGGCATTT TAATTACCAC CATCTTTAAG
TTTAAAGATG TCGAGATCGA CGATAGTAAC CCCAATGGCC TTAACAACCG CGACAACATC
ATTGTGTTGG TGGACGAAGC CCACCGCACC CAAGAAGGCG GCTTGGGCGA AAAAATGCGC
TGGGCCCTGC CACAAGCGCA CTTCTATGGA TTAACCGGTA CACCGATTTC CGGTATCGAC
CGCAATACCT TCAAGTTATT TGGCGCCGAA GAAGACCCCG GCCGCTATAT GAACCGCTAC
AGCTACAAGC AGTCGATCCG CGATGGCGCC ACTAACCCAG TGAAGTTCGA ACCACGTTTG
GCGGAGCTAC GGGTAGACCG CGATGCCATC AACCAAGAAT TTGAGCAGCT CGCCAAAGAT
AATAACCTCG ACGACGAAGA AAAAGCGGCG CTCTCTAAAC GCGCGGGCAA ATTAGCGGTG
ATGCTTAAAG CGCCTAAACG CATGGCCGCC GTCAGCAATG ATATTGCCGA GCACTTTACC
AGCCACGTAA AGCCGAAAAA GATGAAAGGC ATGGTGGTGG TTTATGACCG TGATGCCTGC
GTTCAGATGT ATTACTTGCT GGGTGAAAAG CTAGGATTTG ATGCCGTTGA AGTGGTGATG
AACGTCGATC AGGCACCTGT AAAAGCCGAA GAAGGCGGTA AAAAAGACAA GCTCAATAAA
GACTGGCGTA AATGGAAGGA AGAGTTAGAC CTGCCGATTA AACAAGCAGA TTTTGAGCGC
TGGCAGCACA TAGATGCAGA AGACCAAACC CAGAAAGACT TAATCGAAAG CTTTAAAGAC
CCCAAACATC CGTTGCAGCT GATCATCGTC ACCGCTAAGC TACTTACCGG CTTTGACGCG
CCGATCTGCT ACTGCATGTA CTTAGATAAA CCGCTGCGCG ACCACACGCT GCTACAGGCC
ATGTGCCGCA CTAACCGTTT GTACGAAACA GACGATGTGC GCAAAGACAT GGGCCTGATC
ATCGACTACC TAGGCGTGTT TGAAAATCTG CGTACCGCGC TTGCTTATAA TCCTGATGAG
ATCGAAGGTG TTGTCGAAGG CATTGAAGCC TTTAAAGAAT TATTACCCGC CCAGTTAGAC
AAGTGTTTGT CCTTTTTCCC GGGTGTTGAC CGCACCTTAG AAGGCTTCGA AGGCATTATG
GCGGCGCAAG AGTGCTTGCC AACTAATGAA AAACGCGATG AATTTGCCGC CAGCTTTGGT
GTGTTAGCCA AGCTTTGGTC GGCCATTAAC CCAGACACCT TCTTAGGGCC GTATCGCAAA
GACTATAAAT GGTTGGCACA GATTTATGAA TCGGTGCGCC CAGTCGGCCA GACCGGTGCT
TTGGTGTGGG CGGCACTCGG TCCTGAAACC ATCAAAATGA TCCATGAACA TACCGACATC
AATCGCATTC GCGACGATAT CGACGAGCTG ATCATGGATG AGCACGCCAT TTTTACCCTG
ACTGACAAAG AACAAGAACA ACGCGCCAAA CGCCTCGAAA TTGACTTGAT GGGCCGTCTG
CGTGGCAGCA ACGACCCTAA GTTTGTCGAG TTAGGTGAAC GCTTAGAAAA ACTGCGCCAA
GACTATGAGT CAGGCGTTAT CAAAGCGATC GATTGGTTAA AAGGCCTGTT AGATGCGGCT
AAAGACACGG TGCAAGCCGA GCGCGAAACC GGCGAGCATG TGGTGACCGA AGAAGACAAC
AAGCAGGCCT TAACCAAACT CTTCTTGGAA ACCCGCCCAG AAACCACGCC GAAACTAATC
GGCGATGTGG TAGAGCAGAT CGACAAGATC GTAAAAGCCA CCCGGTTTGA AGGCTGGCAA
AACTCCAACA GCGGCCCGCG CGAAATCCAA AAGGCGCTGC TGGTGACATT GGCCCAGTTT
GGCTTGGGTA AAGATAAAGA GCTGTTTGCC AAGGCGTATG GGTATATAGA AGAGCATTAT
TGA
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| Protein sequence | MFNEQTVTEN GIIDRLKTLG GVKWICCHGE NLPKQAQDIF VDEWLKDALC SLNPDIAKQP
DYADEVIYKL RGVVLEARHT GLAKANENFH EWLMAEKTLP FGENGDHITI NLIDFDNIAN
NHFVVAQQVH YIAATEVYFD IVLYVNGIPL VVGEVKTATR PSVTWQDGAA DFMGGKKHYW
KNVEPYFVPN LLCFASEGKT FAYGAINARV KDWGPWHNTD LRDDILPGLA SVLDSCEGLL
NPQTLLQLLE SFALFSTVKT GKNTPPKRIK ILPRYPQFEA AKQIVGRVRK GYPKKGLIWH
FQGSGKSLLM LYAAKMLRGD NTLKNPTVLI VVDRRDLDTQ ISETFGGADV KNLIKVQSCK
KLGQHIEQDS RGILITTIFK FKDVEIDDSN PNGLNNRDNI IVLVDEAHRT QEGGLGEKMR
WALPQAHFYG LTGTPISGID RNTFKLFGAE EDPGRYMNRY SYKQSIRDGA TNPVKFEPRL
AELRVDRDAI NQEFEQLAKD NNLDDEEKAA LSKRAGKLAV MLKAPKRMAA VSNDIAEHFT
SHVKPKKMKG MVVVYDRDAC VQMYYLLGEK LGFDAVEVVM NVDQAPVKAE EGGKKDKLNK
DWRKWKEELD LPIKQADFER WQHIDAEDQT QKDLIESFKD PKHPLQLIIV TAKLLTGFDA
PICYCMYLDK PLRDHTLLQA MCRTNRLYET DDVRKDMGLI IDYLGVFENL RTALAYNPDE
IEGVVEGIEA FKELLPAQLD KCLSFFPGVD RTLEGFEGIM AAQECLPTNE KRDEFAASFG
VLAKLWSAIN PDTFLGPYRK DYKWLAQIYE SVRPVGQTGA LVWAALGPET IKMIHEHTDI
NRIRDDIDEL IMDEHAIFTL TDKEQEQRAK RLEIDLMGRL RGSNDPKFVE LGERLEKLRQ
DYESGVIKAI DWLKGLLDAA KDTVQAERET GEHVVTEEDN KQALTKLFLE TRPETTPKLI
GDVVEQIDKI VKATRFEGWQ NSNSGPREIQ KALLVTLAQF GLGKDKELFA KAYGYIEEHY
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