| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sputcn32_3592 |
|---|
| Symbol | |
|---|
| ID | 5078828 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella putrefaciens CN-32 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009438 |
|---|
| Strand | + |
|---|
| Start bp | 4182451 |
|---|
| End bp | 4184628 |
|---|
| Gene Length | 2178 bp |
|---|
| Protein Length | 725 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 640500794 |
|---|
| Product | ABC transporter related |
|---|
| Protein accession | YP_001185099 |
|---|
| Protein GI | 146294675 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG2274] ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain |
|---|
| TIGRFAM ID | [TIGR03375] type I secretion system ATPase, LssB family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGCCTGTCA CAGCGTCTGA AAGAATTGAG CAGTGGACTA TTTCTGCTTC GCAGCGAGTT
ATAGTTGATC CATTGCTAGA TTGTTTAGTG CTCCTCACTG AACATTTTGG AAACCCATGC
TCAAGCGATT CGCTTGCGGC AGGTTTACCC TTGTCTGGTG CTCTTTTAAC ACCAGATTTA
CTTCCACAAG CAGCATCGCG CGCGGGTTTA GCTGCAAAAT TGTCTCGAAA GGGATTAAAT
GAAGTCTCAC CAATACTGCT TCCCTGTATT TTATTATTAA AAGATCAGAA AGCCTGTATA
TTACGCGAGA TTAATTTAGA GTCAGATAAA GCTGTTATTC AATTACCTGA AACGGGTGGT
GAAGAGACAC TCAATATTGA GTCACTAGAA GCCTTATATG TAGGTTATTT ATTTTTAGTA
AAACAAGAAT ACCGTGGTGA CATGGGCTTT GATGTTTATC TTCACGATAA TAAAACCCAT
TGGTTGCTCC AAACCCTAAA AGATTCCGCA CCTATTTATC GAGATGCACT TATTGCGTCT
GTTTTAGTAA ATTTATTTGC GCTCGTTTCA CCACTCTTCA TCATGAATGT GTATGACAAA
GTGGTTCCCA ATCTCGCTTT TGAATCTCTT TGGGTTCTCG CAATTGGTGC TTCTATTGCT
TATCTTTTTG ATCTTGTGAT GCGACAATTA CGAGGCTATT TAATTGATGT TGCAGGTAAA
AAGGTAGATA TCATTGTCTC ATCACAACTT TTTGCTAAAG CCATTGGTAT TCCGCTTGAG
AAACGCTCAC CCAGTATCGG CGGTATGGCA AAACAACTCG GTGAATTTGA CAATATTCGC
GAGATATTAA CCTCTGCAAC AATAACCACA TTAGTTGACT TACCCTTTGC GTTATTTTTC
TTAATTATTA TCTTCATCGT TGCTGGTGAT CTTGCCATTA TTCCCGTTAT CGGGGGCGTT
ATCATTATAG GTTTTACGCT TTACACACAA CCCAAATTAA AAGCTGCGAT TGAAGAAGGT
AATAAGTTTT CAAGCCTTAA ACATGGACAT TTAATTGAAA GCCTCTCTGC GCTTGAGTCA
ATAAAAGCAA ACGGTGCCGA AGGTATAGTG CAACGAAGTT GGCAGCAAAT GATAGGCCAT
AGCGCAAACT GGCAATTGAG ATCTAAAAAC CTATCTAATT CAGTGTCAAA TATTGCCAAC
TTTATTGTCC AGTTTACCGT TGTAAGTGTG GTTATTTTGG GGGTTTATCG GGTTGCTGAT
AATGTCATTT CAATGGGAGG AATCATTGCT GCGGTCATGT TATCTAGCCG TGCCATAGCC
CCGATGGCAC AACTCGCAGG CCTGATGACA AGAGCAAACC ATACAGCAAG TGCATTGCGT
CAACTGAATG ACTTAATGGT GCAAGAAGAT GAGTTTCAAA ATAAAGGTCA TTTAGTCAGT
AAACAGAGAT TACTCGGTAA GATTAATGTC GATAATGTCG GTTTTAGTTA TCCAGGGTCA
GAAAAACCCG TGTTATATCC CATGTCTCTG ACCATTAATC CCGGTGAGCG CATCGCAATT
ATTGGGCGCA ATGGTTCAGG TAAAAGTACA CTCGCCAAAC TTTTAGTCGG TCTTTTCCAG
CCGACCACTG GCAGTCTACG TTACGACGGT ATTGATTCTG CACAAATTCA CCCTAGCGAT
CTACGCCGTA ACTTCGGCTA TTTGCCTCAA GATGTCACGC TATTTCACGG GACGATTAGG
GATAATATTC TCTTTGGTAC TCGCCAAGTG ACTGAACACC AACTGATACG GGCGGTACAA
CTCTCAGGCG TAAGCCAATT TACGAATCTT GAAGCTGAAG GTTTAGATCA GCAGGTTGGT
GAAGGCGGTA TGTCGCTTAG TCGTGGACAA AGGCAAACAG TGGCGCTTGC AAGAGCAACG
CTCAATGATC CGCCAGTACT CTTAATGGAT GAGCCCACAG CAAGCTTAGA TGCGCGTGCT
GAGCAACAGT TTATTCGCTC AATGCAAAAT GTGAGCAAAG ACAGAACCCT ATTGTTAATT
ACGCACAAAA TGCACTTATT ACAATTAGTT GATCGCATTA TCGTGCTTGA ACGCGGTCAT
GTCGTCGCTG ATGGCCCTAA AGCTGAAGTG TTAGAAAAAC TCAATTTTGG TCTGTTCAAT
GGGGGCAGTA AAAAATGA
|
|---|
| Protein sequence | MPVTASERIE QWTISASQRV IVDPLLDCLV LLTEHFGNPC SSDSLAAGLP LSGALLTPDL
LPQAASRAGL AAKLSRKGLN EVSPILLPCI LLLKDQKACI LREINLESDK AVIQLPETGG
EETLNIESLE ALYVGYLFLV KQEYRGDMGF DVYLHDNKTH WLLQTLKDSA PIYRDALIAS
VLVNLFALVS PLFIMNVYDK VVPNLAFESL WVLAIGASIA YLFDLVMRQL RGYLIDVAGK
KVDIIVSSQL FAKAIGIPLE KRSPSIGGMA KQLGEFDNIR EILTSATITT LVDLPFALFF
LIIIFIVAGD LAIIPVIGGV IIIGFTLYTQ PKLKAAIEEG NKFSSLKHGH LIESLSALES
IKANGAEGIV QRSWQQMIGH SANWQLRSKN LSNSVSNIAN FIVQFTVVSV VILGVYRVAD
NVISMGGIIA AVMLSSRAIA PMAQLAGLMT RANHTASALR QLNDLMVQED EFQNKGHLVS
KQRLLGKINV DNVGFSYPGS EKPVLYPMSL TINPGERIAI IGRNGSGKST LAKLLVGLFQ
PTTGSLRYDG IDSAQIHPSD LRRNFGYLPQ DVTLFHGTIR DNILFGTRQV TEHQLIRAVQ
LSGVSQFTNL EAEGLDQQVG EGGMSLSRGQ RQTVALARAT LNDPPVLLMD EPTASLDARA
EQQFIRSMQN VSKDRTLLLI THKMHLLQLV DRIIVLERGH VVADGPKAEV LEKLNFGLFN
GGSKK
|
|---|
| |