Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sputcn32_3523 |
Symbol | |
ID | 5078716 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella putrefaciens CN-32 |
Kingdom | Bacteria |
Replicon accession | NC_009438 |
Strand | + |
Start bp | 4094178 |
End bp | 4097291 |
Gene Length | 3114 bp |
Protein Length | 1037 aa |
Translation table | 11 |
GC content | 43% |
IMG OID | 640500726 |
Product | hypothetical protein |
Protein accession | YP_001185031 |
Protein GI | 146294607 |
COG category | [V] Defense mechanisms |
COG ID | [COG0610] Type I site-specific restriction-modification system, R (restriction) subunit and related helicases |
TIGRFAM ID | [TIGR00348] type I site-specific deoxyribonuclease, HsdR family |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | GTGTTCAATG AAGATTCTCG CGTTAAAATC CCTACCATAC TTCACCTGAT GCGCCTGGGT TATCAGTACT TATCGCTCAA AGATCACTCT TGGGACCTGG ATACCAACAT CTTTCCCGAG TTATTTAAAA AAGCAATTTC CAAGATAAAT CAGGGCATCG AAGAAGACGA AGCAAGACGT TTGCTCAACG ATGTTAAGTT GCTACTGGAT AACGAAGATT TAGGTCGCGC CTTTTTTGAA CGCCTTTCAG AGCGTTCAAA TATCAAGCTT ATCGATTTTG AGAACTTCAA TAACAACAGT TTCCATGTGG TCACAGAACT GACTTGTAAG AACGGTGATG AAGAGTTTCG CCCAGATATT ACCTTGTTGA TTAACGGTAT GCCGTTGGCA TTTATTGAGG TGAAAAAGCC GAATAACCGA GAGGGGATTT TGGCTGAACG AGACCGTATC AATAAACGCT TTCAGAACCC TAAGTTTAAG CGCTTTGCCA ATATCACCCA GTTTATGATT TTCTCTAATA ACATGGGGTA CGATGAGGGC GACCCAGAAC CCATACAAGG AGTCTTTTAC GCTAGCAGTT CATATCACAA GCCAGTATTC AATTACTTCC GTGAAGAAGA GGTGTTAAAT CTCACTGCAT TATTGAAGCC CGTATCGGAT GAAGATGAGC TAAGAGTATT AAAAGACAAT AACCTAGAAG TGATCCGCAG TAATCCTGAA TTTCATACGA ACAAGCAACC CGAGCGCCCA ACCAATCGTA TCTGTAGTTC ATTGGTCAGT CGTGACCGCT TAGCCTTTAT TCTTCGCTAT GCACTGACAT ATGTGTCTGA GTCCGAAGGT TTACAAAAGC ACATAATGCG TTACCCGCAG TTGTTCGCAA CCAAAGCGAT TGAAGATAAG CTCAACACTG GCATTAAAAA AGGCATCATT TGGCATACCC AGGGCAGTGG GAAAACTGCA CTCACATTTT ACAACGTGCG ATTTTTAACT GACTACTTCC AACGCCAACA GGTGATCCCT AAGTTTTACT TTATCGTCGA TAGGTTAGAC TTGTTACAAC AAGCACTACG TGAATTTACA GCTCGCGGTC TTACAGTATA TACAGTGAAT TCACGGGAAG AATTTGCACG CGATATCAAA GCGACGCAAG TCATCCACAA TCACTCTGGT AAGCCAGAAA TCACAGTAGT GAATATCCAA AAATTTGAAG ATGATCCTGA CGTAGTTAGC ACCAAAGACT ACAACGTTGC GATACAGCGA GTGTACTTTT TGGACGAAGT GCACCGCAGC TACAACCCCA AAGGTAGCTT TTTAGCCAAT TTAAGTCAGT CAGACACCAA CGCCATCAAA ATAGGCTTAA CCGGTACACC GCTATTGGGT GATGACTACA ACTCACGCGC ATTGTTCGGC GACTACATTC ACAAGTATTA CTACAACGCT TCAATTGCCG ACGGTTACAC TCTGCGTTTG ATCCGCGAAG AAATCTCCAC CCAATATAAA ATTGAGCTAC AAAAAGCGTT AGAAGAAGCT GAAGTGAAGA TGGGGGATGT CGATCGCAAA TTGATCTATG CCCATCCAAG TTTTGTTGAG CCTATGCTCG ATTATATTGT CACTGACTTT GAAAAAAGCC GTGGTGCATT AAACGATGCT AGTATTGGCG GTATGGTGAT CTGTGATAGT TCAGAGCAAG CGGAACAGAT GTTTGAGATT TTCAATGCTG TGTATGCTGA AACACCTCTT CTACCTCAAA AGCATATCAA CTCAACGTGT GAAGTATTAG AAGTCGCTGA GCCTACACCA GTCGCTTACG CCGAATCCAT TAAACAAGCA CAAAAGGTAA AAAGTGCAGC GCTGATTCTG CACGACATAG GAACTAAAGA AGAGCGTAAA AACTGGGTAG AAGACTTTAA AGCAGGCAAA ATCGATTTAT TGTTCGTTTA TAACATGCTG CTCACTGGCT TTGATGCCAA GCGATTAAAA AAGCTCTACT TAGGCAGAGT GATTCGTAAA CACAACTTGC TGCAAGCCTT GACGCGAGTA AATCGCCCTT ACAAAAACTT CCGCTATGGC TACATCGTAG ATTTTGCCGA TATACGCAAA GAATTTGATG CTACCAATAA AGCCTATTTC GACGAGTTAC AGTCTGAATT AGGTAATGAG ATGGAACACT ACTCGCACCT GTTTAAATCT CAGGAAGAGA TCAAGCAAGA AATCGAGCAC ATCAAAGACG TGTTGTTCCG TTTTGATACC GAAAACATGG AAGAGTTTTG CAACCAGATC AGCCAAATTC AGGACCGCGA TACCGTCTTA GCATTAAAAA AAGCCCTAGC CGATGCTCGT AGTCTGTATA ATCTCATCCG CTTACAGGGC GATTATGAGA GTCTGGCTGA CTTAGATTTT GCCAAACTTA ATGTGCTCTA CCGCGAAACC TGCAACCATC TTGATTTACT TAACCTCAAG AACGATTTAG AAAGCGGTCA AGACACCAGT AACTTACTCA ACCGTGCCTT GGAAGATGTG ATATTCAAGT TTGTCAAAAT CGGCGAGGAA GAGTTAGTTC TGGCCGATAA GCTGAAAAGC ACTCTGCGGC AAACTCGAGA AGCGCTGGCC AGCAATTTTG ACCAGCAAGA CCCGCAGTTC ATCAGCTTAA AAGAAGAGTT AGAGCGCCTG TTTAAGAAGA AAAACTTAAG TGAAGTTACC CAAGACGAAA TGGTTGCCAA CATCGACGCG CTCAATAAAA TTTACGATCG TGTTAAAGAG CTAAACCGCC AAAACAACCA ACTGCGGCAA AAGTACTTGG GCGATGCAAA ATACGCTCGC ATCCATAAGC GGTTGCAAGA ACGTCAAAGC AAGCAGGGTG ACATTAGCGA ATCAGAGCGT AAAATCTTTG CCGCTCTAGC CGGCGTAAAA ATAGATGCAG ACGAGCAGGT ACTGAATAAC AGTCAGATTT TGGATAACGA AGGCTATTTT GAACGTCAAA TGATGCCTCT GGTGATTACT CGCTTTATGA AAGAGCAGCA GATCAAGCTC AATGCCGACG CCTCCCGCTA CATTAATCAC TTGGTCGTCG CTGAATATTT AAAAGAATTT AATACTGGTA GCCAATCTTG GTAG
|
Protein sequence | MFNEDSRVKI PTILHLMRLG YQYLSLKDHS WDLDTNIFPE LFKKAISKIN QGIEEDEARR LLNDVKLLLD NEDLGRAFFE RLSERSNIKL IDFENFNNNS FHVVTELTCK NGDEEFRPDI TLLINGMPLA FIEVKKPNNR EGILAERDRI NKRFQNPKFK RFANITQFMI FSNNMGYDEG DPEPIQGVFY ASSSYHKPVF NYFREEEVLN LTALLKPVSD EDELRVLKDN NLEVIRSNPE FHTNKQPERP TNRICSSLVS RDRLAFILRY ALTYVSESEG LQKHIMRYPQ LFATKAIEDK LNTGIKKGII WHTQGSGKTA LTFYNVRFLT DYFQRQQVIP KFYFIVDRLD LLQQALREFT ARGLTVYTVN SREEFARDIK ATQVIHNHSG KPEITVVNIQ KFEDDPDVVS TKDYNVAIQR VYFLDEVHRS YNPKGSFLAN LSQSDTNAIK IGLTGTPLLG DDYNSRALFG DYIHKYYYNA SIADGYTLRL IREEISTQYK IELQKALEEA EVKMGDVDRK LIYAHPSFVE PMLDYIVTDF EKSRGALNDA SIGGMVICDS SEQAEQMFEI FNAVYAETPL LPQKHINSTC EVLEVAEPTP VAYAESIKQA QKVKSAALIL HDIGTKEERK NWVEDFKAGK IDLLFVYNML LTGFDAKRLK KLYLGRVIRK HNLLQALTRV NRPYKNFRYG YIVDFADIRK EFDATNKAYF DELQSELGNE MEHYSHLFKS QEEIKQEIEH IKDVLFRFDT ENMEEFCNQI SQIQDRDTVL ALKKALADAR SLYNLIRLQG DYESLADLDF AKLNVLYRET CNHLDLLNLK NDLESGQDTS NLLNRALEDV IFKFVKIGEE ELVLADKLKS TLRQTREALA SNFDQQDPQF ISLKEELERL FKKKNLSEVT QDEMVANIDA LNKIYDRVKE LNRQNNQLRQ KYLGDAKYAR IHKRLQERQS KQGDISESER KIFAALAGVK IDADEQVLNN SQILDNEGYF ERQMMPLVIT RFMKEQQIKL NADASRYINH LVVAEYLKEF NTGSQSW
|
| |