| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sputcn32_2912 |
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| Symbol | |
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| ID | 5078138 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella putrefaciens CN-32 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009438 |
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| Strand | + |
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| Start bp | 3375839 |
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| End bp | 3378976 |
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| Gene Length | 3138 bp |
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| Protein Length | 1045 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640500113 |
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| Product | HsdR family type I site-specific deoxyribonuclease |
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| Protein accession | YP_001184428 |
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| Protein GI | 146294004 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0610] Type I site-specific restriction-modification system, R (restriction) subunit and related helicases |
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| TIGRFAM ID | [TIGR00348] type I site-specific deoxyribonuclease, HsdR family |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACTGAAG ACCAACTGGA ACAAGAGGCA CTAGGCTGGT TAGGTGAGAT TGGTTATACC
CACATTTGCG GCTATGACAT CGCCCCAGAT GGCGCCAATC CTGAACGGCA GGATTATCGC
CAACCCTTGT TGCTAGAGCG ATTAAGAAGC GCTATAGCGC GTCTTAACCC GCAAATCCCA
CAACAGGCCC GTGAGGATGC ATTGGCCTCC GTAATGGATT TGCGCATCCC TTCCCTTCTT
TCAGCCAATC GCCATTTTCA TGGGGTGTTA GTCAATGGTG TGCCTGTTAG TTATCAGAAA
GACGGTGAAA CCCGTGGTGA TTTTGTCCGA CTGATTGACT GGGAAAACCG CCCTGGTACC
AATGAGTTTT TAGCTGTAAA TCAATACACC TTAAAAGGCC CTCACCATTC ACGGCGCCCC
GATATCATCC TGTTTATTAA TGGGCTGCCA TTAGTACTTT TTGAGCTTAA AAACCCGGCA
GATGAACACG CCGATATCTG GAAAGCATAC GACCAAATCC AGACCTATAA AGAGCAAGTA
CCGGACGTAT TCCAATACAA TGAAATTCTT GTCATATCGG ACGGTACCGA AGCACGCATG
GGTTCATTAT CAGCCAATGC CGAGCGCTAT ATGCAATGGC GCACCATTGA TGGTGTTAAC
CTCGACCCAC TTGGGGCTTT TGGTGAACTT GAAACCATGG TCAGAGGGGT ATTTGCCCCG
GCTTATTTAC TGGATTACCT GCGGTTTTTC GTCCTATTTG AAGATGATGG TCAGTTGGTT
AAGAAAATCG CCGGATATCA CCAGTTCCAT GCGGTGCGGT CTGCAATAAC CCAGGTCGTC
ACCGCATCTC GGCCTGATGT AATGGGAAGC AATAAGGGTA AAGGCGGGGT GGTTTGGCAT
ACCCAAGGCA GCGGCAAGAG CATCACCATG ACCTGTTTTG CGGCACGAGT CATGCGCGAA
GCCGCCATGG AAAACCCCAC GATTGTGGTC ATCACAGATC GTAACGACTT AGACGGCCAA
TTGTTTGGCG TATTTTCGCT GGCGCAAGAT TTGTTACGTG AACAGCCAGT TCAGGTTGAA
ACTCGCCAGG ATCTGCGTGC TAAGCTCGCT AATCGTCCCT CTGGCGGTAT CATCTTTGCC
ACAATTCAAA AGTTCGCCCC CGGCGCCGAT GAAGACGTGT TCCCAATTTT ATCAGATAGA
CACAATATCG TTGTCGTCGC CGATGAGGCA CACCGAACCC AGTATGGTTT TGAAGCTAAG
CTTAAAGTGC CTGAGTTAAA CGCGGGTGTT GCCGAAGCCA GCGCGGCTTA TCACAGCCGT
TATCAAGTCG GCTTTGCCCA GCATTTACGC GATGCCTTAC CCAATGCAAC CTTTGTAGCC
TTTACCGGTA CCCCTGTTTC AAGCGAGGAC AGGGATACCC GTGCAGTATT TGGCGATTAC
ATTCATATTT ATGATATGCA GCAGGCCAAA GAGGATGGCG CGACAGTTGC CATCTACTAC
GAATCTAGAC TGGCAAAACT CAAGCTTAAA GAGGAAGAGC TGCCGCATAT CGACGATGAA
GTCGACGAAC TGGCCGAAGA CGAGGAAGAG GAACAGCAAT CTAAACTTAA ATCTAAGTGG
TCAGCACTTG AAAAAATCGT CGGTGCAGAA CCTAGGATAG TCAAAGTCGC CGCCGATCTG
GTTGCGCACT TTGAGGCACG CCAGCAGGCC CAAACCGGTA AGGCGATGGT GGTAGCCATG
AGCCGAGAAA TTTGTGTGCA TCTTTATAAT GCCATCTGTG CTCTACGCCC AGACTGGCAT
GATGACGATC CTGAAAAGGG CGCAATCAAA ATCGTGATGA CAGGCTCAAG CAGCGATAAA
CCGCTACTGA GGCCTCATAT TCACTCAAAG CAAGTTAAAA AACGTCTAGA AAAGCGTTTT
AAAGACCCTA AAGACCCACT TCAAATAGTA ATTGTGCGCG ATATGTGGCT AACCGGCTTT
GATGCCCCTT GTGTTCATAC CCTGTATGTT GATAAGCCAA TGAAGGGCCA TAACCTTATG
CAAGCAATTG CTCGGGTAAA CCGGGTATTT AGGGATAAAC AAGGCGGGCT GGTGGTTGAT
TACATCGGCA TAGCAAACGA ACTTAAGTCT GCATTAAAAG AATACACTGC GAGTAATGGC
AGAGGCCGTC CGACGGTTGA CGCGGCCGAG GCTTGGTCAT TACTTGAAGA AAAGCTCGAC
ATCCTACGCA GCCTGCTCCA CGGATTCGAT TACAGCGACT TCACTAAGGG CGGCCACAAA
CTGCTCGCAG GAGCCGCAAA CCATATCCTT GGGGTCGAAG ATGGCAAAAA GCGCTTTGCC
GATAATGCAT TGGCCATGAG TAAGGCTTTT AGCCTTTGCT GTACCCTAGA TGAGGCTAAA
GCAGTACGAG AAGAGGTGGC CTTTTTGCAG GCGGTCAAAG TACTGCTGAC TAAGCGCGAC
CTCAGCGCCA AAAAACGCAG CGATGAAGAA AAAGACATCG CCATTCGCCA AATAATTAGC
CAAGCCGTTG TGAGTGATGA GGTAGTCGAT ATCTTTGATG CTGTCGGGTT GGAGAAACCC
AATATAGGGC TACTGGACGA TGAGTTTTTG GCCGAGGTTC GCAACTTACC CGAAAAAAAC
CTCGCTGTTG AGCTGCTGGA GCGACTGCTT GAAGGGGAAA TTAAAAGCCG TTTTGCCAGC
AATGTAATCC AACAGAAAAA GTTTTCTGAG CTGCTATCAA ACGTTGTTAA GCGTTATCAG
AACCGCAGTA TTGAAACCGC TCAAGTCATG GAAGAGCTGG TGGACATGGC CAAAAAATTC
CGTGAAGCAG CCAAGCGCGG TGAATCATTA GGGCTCAGTG ATGACGAGGT GAAATTTTAC
GATGCACTCG CCAACAACGA AGCCGCAGTG CTTGAGCTCG GCGATGAAAT CTTAAAGAAA
ATCGCCCATG AGCTAACCGA TAACCTAAGG GCCAATATCA GTGTGGATTG GTCACAGCGT
GAAAGCGTTC GCGCTAAATT ACGCATTATG GTGAAGCGAA TATTACGTAA ATACAAATAT
CCGCCCGACC AAGCTGATGG CGCAGTGCAA TTGGTTTTAC AACAAGCTGA GGCCTTAGGC
GAGCAATGGG CAGCCTAA
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| Protein sequence | MTEDQLEQEA LGWLGEIGYT HICGYDIAPD GANPERQDYR QPLLLERLRS AIARLNPQIP
QQAREDALAS VMDLRIPSLL SANRHFHGVL VNGVPVSYQK DGETRGDFVR LIDWENRPGT
NEFLAVNQYT LKGPHHSRRP DIILFINGLP LVLFELKNPA DEHADIWKAY DQIQTYKEQV
PDVFQYNEIL VISDGTEARM GSLSANAERY MQWRTIDGVN LDPLGAFGEL ETMVRGVFAP
AYLLDYLRFF VLFEDDGQLV KKIAGYHQFH AVRSAITQVV TASRPDVMGS NKGKGGVVWH
TQGSGKSITM TCFAARVMRE AAMENPTIVV ITDRNDLDGQ LFGVFSLAQD LLREQPVQVE
TRQDLRAKLA NRPSGGIIFA TIQKFAPGAD EDVFPILSDR HNIVVVADEA HRTQYGFEAK
LKVPELNAGV AEASAAYHSR YQVGFAQHLR DALPNATFVA FTGTPVSSED RDTRAVFGDY
IHIYDMQQAK EDGATVAIYY ESRLAKLKLK EEELPHIDDE VDELAEDEEE EQQSKLKSKW
SALEKIVGAE PRIVKVAADL VAHFEARQQA QTGKAMVVAM SREICVHLYN AICALRPDWH
DDDPEKGAIK IVMTGSSSDK PLLRPHIHSK QVKKRLEKRF KDPKDPLQIV IVRDMWLTGF
DAPCVHTLYV DKPMKGHNLM QAIARVNRVF RDKQGGLVVD YIGIANELKS ALKEYTASNG
RGRPTVDAAE AWSLLEEKLD ILRSLLHGFD YSDFTKGGHK LLAGAANHIL GVEDGKKRFA
DNALAMSKAF SLCCTLDEAK AVREEVAFLQ AVKVLLTKRD LSAKKRSDEE KDIAIRQIIS
QAVVSDEVVD IFDAVGLEKP NIGLLDDEFL AEVRNLPEKN LAVELLERLL EGEIKSRFAS
NVIQQKKFSE LLSNVVKRYQ NRSIETAQVM EELVDMAKKF REAAKRGESL GLSDDEVKFY
DALANNEAAV LELGDEILKK IAHELTDNLR ANISVDWSQR ESVRAKLRIM VKRILRKYKY
PPDQADGAVQ LVLQQAEALG EQWAA
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