| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sputcn32_2778 |
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| Symbol | |
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| ID | 5080751 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella putrefaciens CN-32 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009438 |
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| Strand | - |
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| Start bp | 3224100 |
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| End bp | 3225254 |
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| Gene Length | 1155 bp |
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| Protein Length | 384 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 640499972 |
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| Product | riboflavin biosynthesis protein RibD |
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| Protein accession | YP_001184296 |
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| Protein GI | 146293872 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG0117] Pyrimidine deaminase
[COG1985] Pyrimidine reductase, riboflavin biosynthesis |
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| TIGRFAM ID | [TIGR00227] riboflavin-specific deaminase C-terminal domain
[TIGR00326] riboflavin biosynthesis protein RibD |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.145947 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCTTGA ACATAACTTG GTCCGCACTC GATATCCAAA TGATGAGCCG CGCGATTCAA
TTGGCACGCA AAGGCTTTTA TACCACTCGG CCCAATCCTA GTGTGGGCTG CGTTATCGTT
AAAGATAACC AAATCATCGG TGAAGGTTAT CATCAAAAAG CGGGTGAACC CCACGCCGAA
GTGCATGCGC TACGTATGGC TGGTGAACGC GCCCGCGGCG CAACAGCCTA TGTTACCTTA
GAGCCATGCA GTCATTATGG TCGCACACCG CCCTGCGCCT TGGCGCTGAT CAATATTGGC
GTTAAACGTG TGGTGGTGGC GGTAGAAGAT CCAAATCCGC AAGTGGGGGG GCGCGGTATT
CAAATGCTGC GTGACGCCGG CATTGAAGTG GATGTGGGAT TACATCGCGA TGAAGCCTAT
GCCTTAAATT TAGGCTTTAT GAAGCGGATG GAATCAGGTT TACCCAGAGT TACGGTAAAA
TTAGCCGCGA GTCTTGATGG AAAAACTGCG CTGTCTAATG GTGTGTCTAA ATGGATAACT
GGCCCAGAAT CCCGCCGTGA CGTGCAGCGC TTACGCTTAC GTTCCTGCGC GCTAGTTACG
GGGATCGAAA CCATACTGGC AGACGATCCC TCACTCAATG TGCGTTATCA AGAGCTTGGT
AGCTTAAAAG ACAGGGTAAC CGAGGCGCAA TTACTTCAGC CATTAAGAGT CATACTCGAC
AGTCGCGCCC GTTTGCCGTT ATCTGTTGCA TGTTTGGCTA TTGTATCGCC GATACTCTTG
GTCTCGACCG TGGCTTATCC CGCAGAGTTT CAAGCACAAT TGCCCTCCCA TGTGAGTTGC
CTCCTGTTAC CTGCAATTGC AGGTCGCGTC TCGCTGCCTG AACTATTAAG CTATTTAGGC
CAAAGTTGTA ATCACGTGCT GGTGGAAGCG GGGGCAACCT TAGCGGGCGC TTTTTTAGCA
GAGGGGCTTG CCGATGAGTT AGTGCTATAC CAAGCGATGA AAATCCTCGG TGGGCATGGT
CGTAATCTGC TGCAACTGCC CGATTATCAA ACCATGGCAC ACATCCCTGC ACTCACGTTG
GTCGATGAGC GCAAATTAGG GCCAGATACC CGTTTAACCT TGAGCGTTAA GCTTGATACT
TCTTTATTTA ATTAA
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| Protein sequence | MSLNITWSAL DIQMMSRAIQ LARKGFYTTR PNPSVGCVIV KDNQIIGEGY HQKAGEPHAE
VHALRMAGER ARGATAYVTL EPCSHYGRTP PCALALINIG VKRVVVAVED PNPQVGGRGI
QMLRDAGIEV DVGLHRDEAY ALNLGFMKRM ESGLPRVTVK LAASLDGKTA LSNGVSKWIT
GPESRRDVQR LRLRSCALVT GIETILADDP SLNVRYQELG SLKDRVTEAQ LLQPLRVILD
SRARLPLSVA CLAIVSPILL VSTVAYPAEF QAQLPSHVSC LLLPAIAGRV SLPELLSYLG
QSCNHVLVEA GATLAGAFLA EGLADELVLY QAMKILGGHG RNLLQLPDYQ TMAHIPALTL
VDERKLGPDT RLTLSVKLDT SLFN
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