| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sputcn32_2767 |
|---|
| Symbol | |
|---|
| ID | 5080834 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella putrefaciens CN-32 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009438 |
|---|
| Strand | + |
|---|
| Start bp | 3211878 |
|---|
| End bp | 3214679 |
|---|
| Gene Length | 2802 bp |
|---|
| Protein Length | 933 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 640499961 |
|---|
| Product | hybrid sensory histidine kinase BarA |
|---|
| Protein accession | YP_001184285 |
|---|
| Protein GI | 146293861 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0642] Signal transduction histidine kinase
[COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.294821 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACCCCTG TCAACAACAT GACCAAATAC AGCCTACGTT CTTGGGTTCT TGTGCTGGCG
CTCGCGCCAA CAATTTTGGT CGGTCTTCTT CTGGGCAGCT ACTTTACCAT AAACCGCTTT
TATGAGCTCG AAGATACGCT GATTGAACAA GGCAGTAATA TTATCGAACC ATTAGCAATT
GCCAGTGAAG TGGGATTAAT AGGAAATGAT CGTGAAGCCA CTAAAAGGTT ACTCGCCGCG
GCACAACTCA ATAAATCAAC CTTAGTCAAA TCGATCGCCA TTTTCGATAT CCAAAATCAA
CTGTTTGTCA CATCCCATTA CCACAAAGAT TTTGAAATGA TGCGCTATAA AGAAGCGCTC
ACCAATTTAC ATAAAACCGA AATAGAACAT GTTGGCGACA GCCTTATTTT ACGAACACCC
ATTTTTGCGA GTACACCTTC AGCGACTCTC GCTAATGTAG ACATCCAAAC CGATAACGGT
GAATTACTGG GTTATATCTC AGTTATTATC AATAAGGAAC GCGCGCTACT CGAACAGCAT
AGAGCCGCCG TTGCCGCTTT TATCATGGTA TTACTGGGCG TTCAATTAAA CCTATTATTT
ACTTTTAGGT TAGTAAAAAA TGTCACTCAA CCTATTACCG AGATGGTACG TGTTGTCGCA
AAAATTCGTG AAGGAAAATT AGATGCGCGT CTAGATGGCA ATTTGATTGG TGAATTGGAT
TTACTTAAAC GCGGTATTAA TGCCATGGCG TGCTCACTGT CGGAATACCA TGATGAGATG
CAGCAAAATA TCGACCAAGC TACCTCAGAT TTACGGGAAA CCTTAGAACA AATCGAAATC
CAAAACGTCG AGCTAGATTT GGCGAAAAAA CGCGCCTTAG AAGCTAGCCG GATTAAATCT
GAATTCTTGG CCAATATGTC CCACGAGTTA CGTACGCCAC TGAATGGTGT GATTGGTTTT
GCTCGCCAAT TGGTAAAAAC ACCTTTGCAT TCAAGTCAAG TTGACTACAT CAATACCATT
GAGCGCAGCG CCACTAATCT ACTTGCTATC ATCAATGATA TTCTCGATTT TTCGAAACTC
GAAGCGGGAA AAATGGTGCT AGAAAATATG CCCTTCGGTC TTAGAGAAAC CCTTGGCGAC
ACTATGACCT TGATTTCAGG CAGTGCTCAA GCGAAGGGCT TGGAGCTTGT GGTCGATATC
GCCCCTAATG TACCTGACCA TGTGAATGGT GATGCCATGC GCGTATGCCA AATCATCAAT
AACTTAGTCG GTAATGCCAT CAAATTTACC GACTCAGGTA GCGTGCTCGT AAAGCTTGAA
TTACAAAGTC AATCGGAGGA ACAAGTGATC CTGCGCTGTG ATGTCATCGA TACTGGTATC
GGGATCGATG AAAGCCAACA GGACTTTTTA TTCCAAGCCT TTGGGCAAGC CGATTCATCG
ATCTCGCGAC GTTTCGGTGG TACAGGACTT GGCTTAGTGA TCACTAAGCG TTTAGTTAAC
CAAATGGGGG GACAAATAGG TTTTACCTCC TCTGTCGATA AAGGCTCAAA TTTCTGGTTC
ACTCTGCCAC TGGGGTTAGG TCAATTCCAA ATTGGTGATT CGCTACCATT AGAAAAACTC
AAAGATAAAA CCATTCTTTT TTATGAGCCA AGAGTACTCA CCCATGCTGT TTTAAGCCGC
CAATTGCGCC TATGGGATAC TAAAGTGACA CATCATCAGC ATATCCCTAA CCTATTGACT
ACACTCGCAA ACACCGAAGA AGCATACGAT TATATTCTGT TAAGTTGTCA TGGTTTTACC
GATGCAACGC AATTGGTTGG CACTTTAAAT CTTGCGAAAA CGAAAACGGA CTGTTTAGTC
GTACTCTACG ATTGCCAAGA GCAAGATGCC TTGAGCAAGT TTATACGACC TAATGCCGAT
GTCGTGCTAT CACTGCCTGT CAGTGAGCAT CAACTTGCCC GTAATATGCT CTATCCTCCA
CTCGAATATG ACATACAGGC TCCCATCACA ATCTCGGCAC CTGCAGCGCG GCAATCCTTA
ACGGTATTGG CAGTAGATGA TAACTTTGCC AATTTAAAAC TGATTGATAC CTTACTCAAT
GAATTAGTCA CCACTGTTAT TGCTGTTAAT AATGGGGATG AAGCGGTCAA ACAGGCTAAA
ACTCGTACTT TCGATTTGAT TTTTATGGAT ATCCAAATGC CGGGGACCGA TGGCATTAGT
GCAACAAAGC AAATACGCCA AGGCTCGATG AACCGCAACA CGCCGATCAT TGCCGTGACA
GCCCATGCCA TTGCCGAAGA ACGTGAGCTG ATTTTAGGCA GTGGCATGGA TGGCTATTTA
CCTAAACCTA TCGATGAAGC TGCACTAAAA GACGTTATTC ATCGCTGGAT CACAAGACCT
AAATTCACCC ATTTTGACCT GCATACGCTG AACTGGGATC TTTGCTTAAC TCAAGCAAAT
CATAAATCGA ACCTCGCCCT TGAGATGTTA AAAATGCTGC TGGACTCACT ACCTGAAACG
GTAGAGAAAA TTCAAACGGC GCTAGGCCAA AATGATCAGG CCACTATGCT CAGTACAATC
CATAAGCTGC ATGGCGCAAG CTGCTATTGC GGCGTCCCCA CCACTCAAAG GTTATGCCAA
GAGATTGAAT CCGCGTTAAA ACGTCAAACC CCTGTGGAAG ATCTCGAACC TGAAATACTA
GAGTTACTTG ATGAGTTAAC TAAGGTAGAA TCAGCGGTAA AACAAGTGCT ATCACAGCTA
TCAGCGGAAA TAACAGATGA CCAAAAAAAC GGGCTTCTTT AA
|
|---|
| Protein sequence | MTPVNNMTKY SLRSWVLVLA LAPTILVGLL LGSYFTINRF YELEDTLIEQ GSNIIEPLAI
ASEVGLIGND REATKRLLAA AQLNKSTLVK SIAIFDIQNQ LFVTSHYHKD FEMMRYKEAL
TNLHKTEIEH VGDSLILRTP IFASTPSATL ANVDIQTDNG ELLGYISVII NKERALLEQH
RAAVAAFIMV LLGVQLNLLF TFRLVKNVTQ PITEMVRVVA KIREGKLDAR LDGNLIGELD
LLKRGINAMA CSLSEYHDEM QQNIDQATSD LRETLEQIEI QNVELDLAKK RALEASRIKS
EFLANMSHEL RTPLNGVIGF ARQLVKTPLH SSQVDYINTI ERSATNLLAI INDILDFSKL
EAGKMVLENM PFGLRETLGD TMTLISGSAQ AKGLELVVDI APNVPDHVNG DAMRVCQIIN
NLVGNAIKFT DSGSVLVKLE LQSQSEEQVI LRCDVIDTGI GIDESQQDFL FQAFGQADSS
ISRRFGGTGL GLVITKRLVN QMGGQIGFTS SVDKGSNFWF TLPLGLGQFQ IGDSLPLEKL
KDKTILFYEP RVLTHAVLSR QLRLWDTKVT HHQHIPNLLT TLANTEEAYD YILLSCHGFT
DATQLVGTLN LAKTKTDCLV VLYDCQEQDA LSKFIRPNAD VVLSLPVSEH QLARNMLYPP
LEYDIQAPIT ISAPAARQSL TVLAVDDNFA NLKLIDTLLN ELVTTVIAVN NGDEAVKQAK
TRTFDLIFMD IQMPGTDGIS ATKQIRQGSM NRNTPIIAVT AHAIAEEREL ILGSGMDGYL
PKPIDEAALK DVIHRWITRP KFTHFDLHTL NWDLCLTQAN HKSNLALEML KMLLDSLPET
VEKIQTALGQ NDQATMLSTI HKLHGASCYC GVPTTQRLCQ EIESALKRQT PVEDLEPEIL
ELLDELTKVE SAVKQVLSQL SAEITDDQKN GLL
|
|---|
| |