| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sputcn32_2210 |
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| Symbol | yebU |
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| ID | 5080332 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella putrefaciens CN-32 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009438 |
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| Strand | + |
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| Start bp | 2547988 |
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| End bp | 2549505 |
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| Gene Length | 1518 bp |
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| Protein Length | 505 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 640499372 |
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| Product | rRNA (cytosine-C(5)-)-methyltransferase RsmF |
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| Protein accession | YP_001183730 |
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| Protein GI | 146293306 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0144] tRNA and rRNA cytosine-C5-methylases |
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| TIGRFAM ID | [TIGR00446] NOL1/NOP2/sun family putative RNA methylase |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATATACT CACGCCAATT GATACACAGT CTATTTCCCT ATGGTTCAAT GAAATCAATG
GCTCAATTAA ATCAAAATTT TATCGATACA ATCACCCAAG AACTGCCCGC CCATTTGTCT
ATGGATGATT TTATTGCCGC CTGCGACAGG CCGCTTAGAC GTTCAATTCG GGTCAATACC
TTAAAAATCA GCGCAGACGA CTTTAAGACC TTGATGCAAC CTAAGGGCTG GACATTTGAT
CCTATACCTT GGTGTAAAGA TGGATTTTGG ATCAGTTACG ACGAAGAAGA ACAACTCGGC
AACGCCTTAG AACACATTCA GGGCTTATTC TACATCCAAG AAGCCAGTTC TATGTTGCCG
CCGACCGCAC TTTTTACACC TAGTGCATTT ACGCCTAGTG CAAAGTGGCA ATGCGTATTG
GATCTCGCCT CCGCACCCGG TTCAAAAACC ACCCAAATAG CCGCACTCAT GCACAATTCA
GGGTTACTGA TCGCCAATGA GTATTCAGCG AGCCGCGTGA AAGTGCTACA CGCGAATGTA
CTGCGCATGG GTGCGAGTCA CTGTGCGCTC ACCCACTTCG ATGGCCGTGT GTTTGGTGAA
TACTTGTATG AAAGTTTTGA TGCCGTGCTT ATTGACGCCC CCTGTGGCGG TGAAGGCACT
GTGCGTAAAG ATGCCGATGC CCTAAAACAC TGGAGCCTAA ACGATGTACT GGCGATAAGT
GAAACCCAAA AAGCCCTAAT CGAATCGGCA TTTTTAGCCC TAAAACCCGG TGGTAGCTTA
GTCTATTCCA CTTGCACCTT AAATCGCCTT GAAAACCAAG GCGTGTGCGA ATATTTGAAG
CAAACCTACG GTGATGCGGT GCAATTTGAA TCCTTAAGCG ATTTATTTGA GGGCGCTGAA
CGCGCTACCA CTCCCGAAGG CTTCTTACAT GTCTGGCCAC AGATTTACGA TAGTGAAGGT
TTTTTTGTCG CTAAATTGAC AAAAACTGCC TCTGTGCCGC GTTTACAACC CGAGCCTACA
CTGCAAAAAA ACTTCCCCTT TACTCCAGCA ACAACTAAGC AAGCCCAAGG AATAAAAGAC
TATTTTCAAC AAGACTTAGG GATAAGCTTG CCAGATGACC TTATTATGGT GCGTGATGAT
GAATTCTGGT TATTTCCGCA TGAATTTAGG GATTTTATCG GCCGTATGCG GTTTCAGCGT
ATTGGTATTA AACTCGCCGA TAGCACTAAG CATGGTTTTA AAGTCCGCCA TGAGGCAATT
ATTGCATTAG CGGGAAAACA GCTCAGCCCA ACCGCAAAAA CGGTTGATCT GAGCGATGTC
GAAGCGAAAG AGTACCTAAT GGGAAGAGAT ATCAGCCTAA ACACCGCAGT AAAAGCCCAA
GGTGAAGTCA TCGTCTGTTA TGGCGGAGCC CCCTTAGGTA TGGCAAAGCA CTTAGGTAAT
AGATTAAAAA ACAATCTCCC TCGGGATTTA GTGAAAGATA AAGTATTACT GCTATCAGAA
CAGATAAAAT CGTTATAG
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| Protein sequence | MIYSRQLIHS LFPYGSMKSM AQLNQNFIDT ITQELPAHLS MDDFIAACDR PLRRSIRVNT
LKISADDFKT LMQPKGWTFD PIPWCKDGFW ISYDEEEQLG NALEHIQGLF YIQEASSMLP
PTALFTPSAF TPSAKWQCVL DLASAPGSKT TQIAALMHNS GLLIANEYSA SRVKVLHANV
LRMGASHCAL THFDGRVFGE YLYESFDAVL IDAPCGGEGT VRKDADALKH WSLNDVLAIS
ETQKALIESA FLALKPGGSL VYSTCTLNRL ENQGVCEYLK QTYGDAVQFE SLSDLFEGAE
RATTPEGFLH VWPQIYDSEG FFVAKLTKTA SVPRLQPEPT LQKNFPFTPA TTKQAQGIKD
YFQQDLGISL PDDLIMVRDD EFWLFPHEFR DFIGRMRFQR IGIKLADSTK HGFKVRHEAI
IALAGKQLSP TAKTVDLSDV EAKEYLMGRD ISLNTAVKAQ GEVIVCYGGA PLGMAKHLGN
RLKNNLPRDL VKDKVLLLSE QIKSL
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