| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sputcn32_1848 |
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| Symbol | |
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| ID | 5079215 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella putrefaciens CN-32 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009438 |
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| Strand | - |
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| Start bp | 2111280 |
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| End bp | 2113661 |
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| Gene Length | 2382 bp |
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| Protein Length | 793 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640498998 |
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| Product | electron transport complex protein RnfC |
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| Protein accession | YP_001183370 |
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| Protein GI | 146292946 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG4656] Predicted NADH:ubiquinone oxidoreductase, subunit RnfC |
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| TIGRFAM ID | [TIGR01945] electron transport complex, RnfABCDGE type, C subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.00264282 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGCTAACTT TATTAGATCA ATTAGATAAA GGAACCCTTT GGCGCTCGCA TGGTGGTATA
CACCCTCCAG AAGTCAAATT TCTCTCAAAT GGCACTCCTA TAGCAACACT GCCATTAGCA
AAAACCTATT TAGTCCCTAT ACCTCAGGTG GGGGAAAATT GCACACTTGC GGTAAAGCTC
GGCGATAAAG TGTTAAAAGG CACGCCATTA ACTCAAGGCC CCTCTATTTG GCATTTACCT
GTGCATGCGC CGACATCAGG TACTATCGTT GCTATTGAGC CAAGAGCCAG CAACCATGCC
TCAGCCCTCC CCGTTAATAC GTGCGTTATC GAAGCCGATG GGAAAGATAC TTGGTGCGAA
TTAGCCTCCA ACGATCTCGA TAGCCTAAGC CATCAGCAAA TTATCGATAA AATACATCAA
GCGGGTGTTG CGGGTATGGG CGGCGCGGCT TTTCCGAGTC ATATCAAACT CAATCCCGCG
AGCGAAATTG ATTTAGTCAT TATCAATGGT GTTGAGTGTG AGCCTTATAT CAGCTCAGAT
GACAGATTAA TGCGCGAATA CAGCCAAGAT ATTCTGGCAG GGATTGCCAT TATTTATCGG
TTATTAACAC CCAAACGTAT CGTTATCGCC ATTGAAGATA ATAAGCCTGA AGCGATCAAG
GCCATGCAAA TGGCTGTAAC GCAAAGTGCG CTACCGACAG GCAGTATTCG AGTTACCGTT
ATCCCCACCA AATATCCTTC GGGCGGTGAA AAACAGCTTA TTCAGATCAT TACTGGCCGT
GAAGTGCCCT CTGGCGCCAT TCCTGCCAAA CTCGGTATCG TTGTCCATAA CGTCGGCACA
GCCTTTGCCA TACATCAAGC AGTTGTCCAA GATAAACCGC TGGTTGAGCG CGTTGTCACA
GTGACAGGTA AAAATGTGGG TAAACCTGGT AACTATTGGC TGCCAATTGG AACCCCCGTT
GAGCATGTAC TCATGCAAAC CGAGTTTAAA CCTGAATCAG AGCAGAAGAT CATCGTTGGT
GGGCCTATGA TGGGCCATGC ACTACCGACC ATTAATGTAC CTATTTTAAA AGGTACTAAC
TGTATTTTGG TGCCGAGTAA TCAAGAGATT GGGGTGACAC CAGAGGAAAA AGCGTGTATT
CGCTGCGGCG AGTGCGCCAA TGTCTGCCCT GCACTGCTAT TACCACAACA ACTCTTTTGG
CACGCAAAAG CCGAGGAATA TGATAAGGCT GCCAGTTTTA ACCTAAAAGA TTGTATTGAA
TGTGGTTGCT GTAGTTATGT CTGCCCGAGT GATATTCCTT TAGTCGAATA TTACCGTATT
GCCAAATCAG CCTTAAAACA AACTGCCGAT GAAAAGCAAC AGGCAGAACG TGCCAAACAC
CGTTTTGAAG CACGTTTGGC TCGTCTAGAA GAAGAAAAGC TCGCCCGCGA AGCCAAAGCA
AAAGAAGCCG CAGAGCGTCG CCAGGCAACG ATGACGGGCA CAGATAAAAA TGCCGTTGCT
GAAGCGATGG CACGTATTGC AGCCAAAAAA GCCGCTGCGA CGCAGGCACC CAGTGAGACT
GCAATAGCCC CCACTGCCGT GGTCGAAGTA CCAAGGGAAA AGGCAGCCGT TGCCGCAGCC
ATCGCCCGTG CCAAAGCCAA GAAAGCCGCC GCGGCCACAG TTTCTCAAGT TACTGATGAT
GAACCGGATT CATCTATGGA AATCGAGCAA GCCGAGCCTT TATCGCAAAA AGATAAAGTT
GCGGCCGCCA TTGCTCGGGC CAAAGCGAAA AAGGCGACGA TGAAAGCCGG CTCAGATGTT
AACGAGGATA TTGATGCCGC TGAAGTCGAC GCCGAAAAGC GGGTTACTGG ATCCGCAGCT
AGTACTGAGG TGGATGATAA AAAGGCCAAA ATCGCCGCGG CCGTCGCCCG TGCTAAAGCC
AAGAAAGCGA TCCAGCAAAG TGGCATCGTA AGCGAAGATC AAACGCCAGC GGTTCAAGCA
CCTGAGGATC AAGCGACAAA AACTCCAGTA GTGAATACGC CTGTCGCCGA GCGAGAGTCA
AGCACTGTTA CACCGAGTCC TGAGGATGAT AAAAAAGCCA GAGTTGCGGC AGCCATTGCC
CGGGCTAAAG CCAAAAAAGC GGCCGCCCAA GCCGATTCGA GTGAGGTTGC TGAAGTTCAG
CCAAAGCTAG AGGCAGAATC AGCTCAGCCA AGTGATACGC CGCTTAAGCC TGAACCCATT
ACTGAGCTTA GATCAGAACT TAGCTCAGAA CTCAGCTCAG AGCCGAGTCA TCAACTCAGT
CCCGAAGATG AGAAAAAGGC TAAAATCGCT GCAGCCGTTG CCCGTGCAAA AGCGAAAAAA
GCGGCAAGGG CCGTGGATGC GACAAGTGAT TCAAATGAAT AA
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| Protein sequence | MLTLLDQLDK GTLWRSHGGI HPPEVKFLSN GTPIATLPLA KTYLVPIPQV GENCTLAVKL
GDKVLKGTPL TQGPSIWHLP VHAPTSGTIV AIEPRASNHA SALPVNTCVI EADGKDTWCE
LASNDLDSLS HQQIIDKIHQ AGVAGMGGAA FPSHIKLNPA SEIDLVIING VECEPYISSD
DRLMREYSQD ILAGIAIIYR LLTPKRIVIA IEDNKPEAIK AMQMAVTQSA LPTGSIRVTV
IPTKYPSGGE KQLIQIITGR EVPSGAIPAK LGIVVHNVGT AFAIHQAVVQ DKPLVERVVT
VTGKNVGKPG NYWLPIGTPV EHVLMQTEFK PESEQKIIVG GPMMGHALPT INVPILKGTN
CILVPSNQEI GVTPEEKACI RCGECANVCP ALLLPQQLFW HAKAEEYDKA ASFNLKDCIE
CGCCSYVCPS DIPLVEYYRI AKSALKQTAD EKQQAERAKH RFEARLARLE EEKLAREAKA
KEAAERRQAT MTGTDKNAVA EAMARIAAKK AAATQAPSET AIAPTAVVEV PREKAAVAAA
IARAKAKKAA AATVSQVTDD EPDSSMEIEQ AEPLSQKDKV AAAIARAKAK KATMKAGSDV
NEDIDAAEVD AEKRVTGSAA STEVDDKKAK IAAAVARAKA KKAIQQSGIV SEDQTPAVQA
PEDQATKTPV VNTPVAERES STVTPSPEDD KKARVAAAIA RAKAKKAAAQ ADSSEVAEVQ
PKLEAESAQP SDTPLKPEPI TELRSELSSE LSSEPSHQLS PEDEKKAKIA AAVARAKAKK
AARAVDATSD SNE
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