| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sputcn32_1496 |
|---|
| Symbol | |
|---|
| ID | 5079651 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella putrefaciens CN-32 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009438 |
|---|
| Strand | - |
|---|
| Start bp | 1709055 |
|---|
| End bp | 1709840 |
|---|
| Gene Length | 786 bp |
|---|
| Protein Length | 261 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 640498628 |
|---|
| Product | ABC transporter related |
|---|
| Protein accession | YP_001183020 |
|---|
| Protein GI | 146292596 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG4167] ABC-type antimicrobial peptide transport system, ATPase component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACGACCC CACTGCTTAA AGTTAACGAT CTCTACAAAA GATACGACAC AGGTTATAAG
GGGTTCTCAC GCCAATATAA CGATGCATTA GCGCCAGTAT CCTTCGAGCT TAACCGCGGA
GAAACCTTAG CGATTGTGGG TGAAGCTGGC TCAGGTAAAA GCACTCTTGC CCGTATCTTA
GTTGGTGCAG AACCCCGTAG TGGTGGCGAA ATTTTCTTTG AGGGCGAGGC CTTAGATAGC
CGTGATATTA AACAGCGTTG TCGGTTGATT AGAATGATTT TTCAAGATCC TAATACTTCA
CTCAACCCAC GCCTGACCAT TGGCCAATTG CTTGATGAAC CCTTACGTTT TAATACCCAA
CTTTCGGCTA AAGAGCGCCA TAATCAGGTA GTAGATACTC TTAGAAAAGT CGGCCTATTA
CCCGAGCATT CGGATTTTTA TCCCCATATG ATTTCTGAGG GCCAAAAACA ACGAGTTGCC
GTTGCTAGAG CGTTAATGCT CAATCCTAAG ATCATCATCG CCGACGAAGC CTTGACCGCA
TTGGATCTTT CTGTACGCTC ACAAATTCTC AATTTACTCT TAAGACTACA AAAAGATCTC
GGCTTGTCTT ATATCTTCGT TTCCCATAAT CTCAACATCA TTCGCCATGT TAGCGATAAA
ATCATGGTAT TACACAAGGG CGTAATGGTT GAAAAAGCGC TTACAGAACA GATATTTAAT
TCACCACAAC ATGAGTACAC TCAAAGACTT GTTCAAGAGC AGAGTCTGTT TGTCCACAAA
CGCTAA
|
|---|
| Protein sequence | MTTPLLKVND LYKRYDTGYK GFSRQYNDAL APVSFELNRG ETLAIVGEAG SGKSTLARIL
VGAEPRSGGE IFFEGEALDS RDIKQRCRLI RMIFQDPNTS LNPRLTIGQL LDEPLRFNTQ
LSAKERHNQV VDTLRKVGLL PEHSDFYPHM ISEGQKQRVA VARALMLNPK IIIADEALTA
LDLSVRSQIL NLLLRLQKDL GLSYIFVSHN LNIIRHVSDK IMVLHKGVMV EKALTEQIFN
SPQHEYTQRL VQEQSLFVHK R
|
|---|
| |