Gene Sputcn32_1154 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSputcn32_1154 
Symbol 
ID5081664 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella putrefaciens CN-32 
KingdomBacteria 
Replicon accessionNC_009438 
Strand+ 
Start bp1296708 
End bp1297328 
Gene Length621 bp 
Protein Length206 aa 
Translation table11 
GC content46% 
IMG OID640498285 
Productanti sigma-E protein, RseA 
Protein accessionYP_001182681 
Protein GI146292257 
COG category[T] Signal transduction mechanisms 
COG ID[COG3073] Negative regulator of sigma E activity 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones6 
Plasmid unclonability p-value0.0000647553 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGACAAAT TAGGTCAAGA ATGGGTATCT GCCGCGGTCG ATGGAGAGAC TGATGCGCAT 
ACCATGGCAG AATTAGTTGC CGATACGCAT TCGCATAGTA AGTGGCATAA CTATCATATG 
ATAGGGGATG CTATGCGAGG TGAGTTACCT CAGACTATTG TGTTAGATCT TTCCGCTAAC 
ATTGCTGCGG CAATTGAGCT TGAACCTGCG ATTGTCGCCC CTCGAATTAC GGCTCCTGAA 
ATCGGCTCGC CTGCGCAAGT CTCGGTAGAT ACAGGTAGTA GTCGCGTTGT ACCATTATTC 
AAGCAATTTG GGCAGTATGC TATTGCCGCA ACCGTTGCGA TGTTTGCGAT TGTGGGGGTA 
CAAAATTACA ATCAAAATGT TGATGATATG GCATCACCAT CTCCGGTATT AATGACTCGC 
CCATTAGTTG GCAGTGCATC GCCTGTGAGC TTGCAAACTG GCCCTGTGCA ACAGAGTCAA 
GGCTATACTA ATGAGCAGAT GAATGAGCAA CGTCGCAGAA TTAATACTTA TATCCAAGAT 
CATATGTTGC AACAACGATT GAACACAGGT GTAGTTCTAG AGGACAATAA CGAGGTTACC 
CCCGTTTCTG TTAATAAGTA G
 
Protein sequence
MDKLGQEWVS AAVDGETDAH TMAELVADTH SHSKWHNYHM IGDAMRGELP QTIVLDLSAN 
IAAAIELEPA IVAPRITAPE IGSPAQVSVD TGSSRVVPLF KQFGQYAIAA TVAMFAIVGV 
QNYNQNVDDM ASPSPVLMTR PLVGSASPVS LQTGPVQQSQ GYTNEQMNEQ RRRINTYIQD 
HMLQQRLNTG VVLEDNNEVT PVSVNK