| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sputcn32_0872 |
|---|
| Symbol | |
|---|
| ID | 5081883 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella putrefaciens CN-32 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009438 |
|---|
| Strand | + |
|---|
| Start bp | 966657 |
|---|
| End bp | 968651 |
|---|
| Gene Length | 1995 bp |
|---|
| Protein Length | 664 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 640497997 |
|---|
| Product | transketolase |
|---|
| Protein accession | YP_001182400 |
|---|
| Protein GI | 146291976 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0021] Transketolase |
|---|
| TIGRFAM ID | [TIGR00232] transketolase, bacterial and yeast |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCTTCCC GTAAAGTACT CGCCAACGCA ATCCGTGCGT TAAGTATGGA TGCAGTTCAA
AAAGCAAACT CAGGCCACCC CGGCGCCCCA ATGGGCATGG CAGATATTGC TGAAGTGCTG
TGGAATGATT TCCTTAAGCA CAATCCGAAC AATCCGAAAT GGGTAGATAG AGATCGTTTT
ATCCTCTCTA ACGGTCACGG CTCTATGCTG ATCTACTCTT TACTCCACCT GACGGGTTAT
GAACTACCGA TTGAAGAACT GAAACAATTC CGTCAATTGC ATTCAAAAAC CCCAGGTCAT
CCTGAATATG GTTATACCCC AGGTGTTGAA ACCACAACGG GTCCATTAGG CGCGGGCATT
AGTAATGCGG TCGGTATGGC GATTGCCGAA AGAACACTAG CGGCGCAGTT TAACCGCGAC
GGCCACGAGA TTGTTGATCA CTATACTTAC TGCTTCCTTG GCGATGGTTG CTTGATGGAA
GGTATTTCCC ACGAAGCTTG TTCATTAGCT GGCACTTTAG GTTTAGGTAA GTTAATTGCA
TTTTGGGATG ACAACGGTAT TTCTATCGAC GGCCATGTTG AAGGCTGGTT TACCGATGAC
ACGCCAAAAC GTTTCGAAGC TTACGGCTGG CATGTGATTG CCAATGTTGA TGGCCATGAT
AGCGATGCGA TTCGTGCCGC TATTGAAGCG GCGAAAGCCG TGACCGACAA GCCCACCATG
ATCTGCTGCA AAACCATTAT CGGTTTCGGT TCGCCAAACA AATCTGGCAG CCACGATTGT
CATGGCGCAC CATTAGGTGA TGCTGAAATC GCCGCGGCTC GTGAATTCTT AGGTTGGCCA
CATGCGCCAT TCGAAATCCC TGCCGATGTT TACGCCGGTT GGGATGCTAA AGAGGCGGGT
GCTGCAAGGG AAGCCGCGTG GAACGACAAG TTTGCTGCTT ACGCTAAAGC ATACCCAGAA
CTGGCTGCAG AGTACGAGCG CCGTGTACTG AAAGGCGAAT TACCTGCTGA TTTCGAAGCT
AAAGCACAGG CATTTATCCA AGAATGCCAA GATAAAGCCG AAGGTATTGC GAGCCGTAAA
GCGTCACAAA ATGCCATCGG TGCCTTTGGT GCTATGTTGC CTGAACTGCT TGGTGGCTCT
GCCGACTTAG CGGGTTCTAA CTTGACCTTA TGGTCAGGTT CTAAAGGGAT TCAAGACGAT
CCAGCCGGTA ACTATGTGTA CTACGGTGTG CGCGAGTTCG GTATGAGTGG CATTATGAAC
GGCGTGTCAC TCCATGGTGG CTTTATCAAC TACGGTGCGA CTTTCATGAT GTTTATGGAA
TACGCGCGTA ATGCTGTGCG TATGTCTGCA CTGATGGGTA TTCAAAACAT CTTCGTTTAC
ACCCATGACT CTATCGGTCA AGGTGAAGAC GGCCCAACTC ACCAACCCGT TGAGCAATTA
GCTAACCTGC GTATGACGCC AAATATGGCG GTATGGCGCC CCTGTGATGC AGCTGAAACC
GCTGTTGCGT GGAAGGCGGC TATCGAACGT CGTACGGCAC CAACATCACT CATCTTCAGC
CGTCAAAACC TGAAGGCTCA AGTACGCAGT GCTGAGCAAT TAGCCAATGT GGCAAAAGGT
GCGTACGTAC TGCAAGACTG TGCGGGTACA CCAGAACTGA TCCTGATCGC AACCGGTAGT
GAAGTGCAAT TGGCGATGGA AGCGGCAGCG GCTCTGACTG AACAAGGCAA ACAAGTTCGC
GTAGTTTCTA TGCCATCAAA CACTGAGTTT GATAAGCAAG ATGCAGCTTA TAAAGAGTCA
GTATTACCCC GTGCTGTGAC TAAGCGTGTC GCCATTGAAG CAGCCCATAC TGACTTCTGG
TACAAGTATG TTGGTTTCGA AGGCACTGTT GTGGGTATGA CCACTTTCGG TGAGTCTGCG
CCAGGCAACG TGTTGCTGAA GCATTTCGGT TTCACCGTTG AAAATGTGCT GAATGCAGCA
AAATCACTAG GTTAA
|
|---|
| Protein sequence | MSSRKVLANA IRALSMDAVQ KANSGHPGAP MGMADIAEVL WNDFLKHNPN NPKWVDRDRF
ILSNGHGSML IYSLLHLTGY ELPIEELKQF RQLHSKTPGH PEYGYTPGVE TTTGPLGAGI
SNAVGMAIAE RTLAAQFNRD GHEIVDHYTY CFLGDGCLME GISHEACSLA GTLGLGKLIA
FWDDNGISID GHVEGWFTDD TPKRFEAYGW HVIANVDGHD SDAIRAAIEA AKAVTDKPTM
ICCKTIIGFG SPNKSGSHDC HGAPLGDAEI AAAREFLGWP HAPFEIPADV YAGWDAKEAG
AAREAAWNDK FAAYAKAYPE LAAEYERRVL KGELPADFEA KAQAFIQECQ DKAEGIASRK
ASQNAIGAFG AMLPELLGGS ADLAGSNLTL WSGSKGIQDD PAGNYVYYGV REFGMSGIMN
GVSLHGGFIN YGATFMMFME YARNAVRMSA LMGIQNIFVY THDSIGQGED GPTHQPVEQL
ANLRMTPNMA VWRPCDAAET AVAWKAAIER RTAPTSLIFS RQNLKAQVRS AEQLANVAKG
AYVLQDCAGT PELILIATGS EVQLAMEAAA ALTEQGKQVR VVSMPSNTEF DKQDAAYKES
VLPRAVTKRV AIEAAHTDFW YKYVGFEGTV VGMTTFGESA PGNVLLKHFG FTVENVLNAA
KSLG
|
|---|
| |