| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sputcn32_0440 |
|---|
| Symbol | |
|---|
| ID | 5081424 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella putrefaciens CN-32 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009438 |
|---|
| Strand | - |
|---|
| Start bp | 474309 |
|---|
| End bp | 475883 |
|---|
| Gene Length | 1575 bp |
|---|
| Protein Length | 524 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 640497560 |
|---|
| Product | histidine ammonia-lyase |
|---|
| Protein accession | YP_001181971 |
|---|
| Protein GI | 146291547 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG2986] Histidine ammonia-lyase |
|---|
| TIGRFAM ID | [TIGR01225] histidine ammonia-lyase
[TIGR01226] phenylalanine ammonia-lyase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 35 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGCCACA CCCAAGCCGC CGACTCAAAG AATCAATCAG ACTTAAAGAC TGTTGAGTTC
GGCCGTCAAT TTCTAACCTT AGAACAAGTG GTTGCCGTCG CCAAGGGCGC ACCAGTCAAG
CTCTGTGATG ATGCGGATTA TCAAGAATAT ATCCAAAAAG GTGCGCGCTT TATCGATAGC
CTGCTGCACG AAGAAGGCGT GGTTTATGGC GTCACCACAG GTTATGGCGA CTCTTGCACA
GTCAATGTGA GCTTAGATCT GGTCCACGAA TTGCCACTGC ATTTAACCCG CTTCCACGGC
TGCGGTTTAG GCGAGACCTT AAGCATAATG CAGGCCCGCG CTGTGATGGC TTGCCGTTTA
AACTCCTTAG CCATTGGCAA ATCTGGTGTG ACCTATGAGC TATTAAAGCG CATCGAAACT
TTGCTCAATC TCAACATAGT CCCTGTAATC CCAGAGGAAG GTTCGGTCGG TGCCAGTGGT
GATTTAACGC CGCTGTCGTA TTTAGCCGCC GTGTTAGTCG GTGAGCGCGA AGTGATTTAC
CAAGGTGAGC GCCAAGCGAC TCAAGCTGTG TACGCTAAGC TCAACATTAT CCCGCATGTC
CTGCGTCCAA AAGAAGGCTT AGCCCTGATG AACGGCACGG CTGTGATGAC GGCCTTGGCC
TGTTTAGCCT TCGATCGCGC CCAATATCTT GCCCGCTTAA GTAGCCGCAT TACCGCTATG
GCTTCGTTAA CGCTAAAAGG CAACTCGAAC CATTTTGATG AAATCTTATT TGCCGCTAAA
CCGCATCTGG GGCAAAACCA AATCGCCACT TGGATACGGG AAGATTTAAA TCACCACGAA
CATCCACGTA ATTCTGACAG GCTGCAGGAC AGATATTCCA TCCGCTGCGC ACCGCACATT
ATCGGCGTGT TGCAGGATGC GCTGCCGTTT ATGCGTCAGT TTATCGAAAC CGAAGTCAAC
AGCGCCAACG ACAACCCGAT TGTCGACGGC GAAGGCGAGC ATATTCTCCA CGGTGGCCAT
TTTTACGGCG GCCATATCGC CTTTGCGATG GATTCACTTA AGAATACTGT GGCTAACTTA
GCCGATCTTA TCGATCGCCA AATGGCGCTA GTGATGGACC CTAAGTTTAA TAATGGCTTA
CCCGCTAACT TATCCGGCTC AACCGGCCCG CGCCGCGCGA TTAATCATGG CTTTAAAGCG
GTGCAAATTG GCGTATCGGC GTGGACAGCA GAAGCACTCA AGCACACTAT GCCGGCCAGC
GTATTCTCAC GCTCGACCGA ATGCCACAAC CAAGACAAGG TGAGCATGGG CACTATTGCT
GCCCGCGACT GTATGCGCGT GCTGCAATTG ACCGAACAAG TCGCGGCGGC AGCCCTGCTC
GCCATGACTC AAGGTATTGG CCTGCGTATC GCCCAAAATG AGCTGGACGA AGCCTCGCTC
ACGCCATCAT TGGCGAAAAC CCTCGCCCAA GTGCGCGGTG ATTTTGAGAC CTTAATCGAA
GACCGGCCGC TTGAAGCCGT GCTGCGCCAA ACCATAGCTA AAATCCAAGC GGGTGAATGG
GAAGTGTGCC GATGA
|
|---|
| Protein sequence | MSHTQAADSK NQSDLKTVEF GRQFLTLEQV VAVAKGAPVK LCDDADYQEY IQKGARFIDS
LLHEEGVVYG VTTGYGDSCT VNVSLDLVHE LPLHLTRFHG CGLGETLSIM QARAVMACRL
NSLAIGKSGV TYELLKRIET LLNLNIVPVI PEEGSVGASG DLTPLSYLAA VLVGEREVIY
QGERQATQAV YAKLNIIPHV LRPKEGLALM NGTAVMTALA CLAFDRAQYL ARLSSRITAM
ASLTLKGNSN HFDEILFAAK PHLGQNQIAT WIREDLNHHE HPRNSDRLQD RYSIRCAPHI
IGVLQDALPF MRQFIETEVN SANDNPIVDG EGEHILHGGH FYGGHIAFAM DSLKNTVANL
ADLIDRQMAL VMDPKFNNGL PANLSGSTGP RRAINHGFKA VQIGVSAWTA EALKHTMPAS
VFSRSTECHN QDKVSMGTIA ARDCMRVLQL TEQVAAAALL AMTQGIGLRI AQNELDEASL
TPSLAKTLAQ VRGDFETLIE DRPLEAVLRQ TIAKIQAGEW EVCR
|
|---|
| |