| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sputcn32_0327 |
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| Symbol | |
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| ID | 5081206 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella putrefaciens CN-32 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009438 |
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| Strand | - |
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| Start bp | 350449 |
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| End bp | 352569 |
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| Gene Length | 2121 bp |
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| Protein Length | 706 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 640497443 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) |
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| Protein accession | YP_001181858 |
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| Protein GI | 146291434 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 29 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATTAGAT GGCAACACTT ACTCAATAAA CTCAGTACGG ACGATCCCGT ATTGCGAGAA
AAGCTGTCTC TTTGGCAAAC CCATCCCGAT CAAACACCGC TAGCACTTAT CCAAGGTTTT
AGCTTTATCA GCGCCAACCG CGCAACGTTA AATTATTTTG GCACTCATTA CGATGCATTT
GTGAATGCAA CACCCTATGA TTTCTCACCG AGAATCCAAT CATCTGGGCG TAATAGTGTT
GAATTTGCTA GAGAAATGAT ACTCGAAGCT ATCGCGGGTA ATCATGTCGA ATTTAATTGG
TTACATTTAA ACCAACAAGG TCGCGAGCTG CCAACACGCA TTAATTTATA TCGATGCTAT
CTCCAGCAAC AACCCGTGGT ACTCGTCGAA CTACAAGCTC TTAACCGTCG CAATCACGTG
CGAGAGGCCA TTACAGATGG TTTTGCTCAC ATTCCTAAAG AAATACTGTC AACAACCTTA
GAGGAAAGTG CCGAAGCCGT TTATATCACA GATGACGATA ACCGCATCCT TGCCGTTAAC
AAAGCCATGT GCCGTATTTG TGGGTATAGC GCAGAGCAAC TGATTAGCCA TACGCCTGCA
ATGTTAGAAT CTCGCAATCT TAGCCAAGGT GAAGAAACCG ACTGTCAACT GGCGATAAAA
CAACGTGGTT CTTGGCAAGG TGAAACACTT AAAAAGCGTT CAAATGGCAG CACTTTTCCT
GCATGGCAAA GTAGCCGCCG AATTGTGGTT GATGGGGAAA CCCCTTACCA CGTTAATATT
TTTAGTGATA TCAGTACCCA AAAGCAGTTG GAGACCCAAC TCACCACTCG GGCCATGTAT
GATACGCTGA CAGGCTTACC CAACCGTTTT CACTTAAAAC AATTACTTAA TAGCGCGCTA
GAAAAATTAC AAACCGACCC AAATCTCTTA GGCGCTTTGA TGTTTTTAGA TCTCAATGGT
TTTAAAAATA TCAACGACAG CTTTGGCCAC TCAATGGGTG ATAGGGTTTT ACAATTGGTT
GCAGCAAGGC TAGAAGCCGG TTGTATCGAA AAAGCCGATA TTGCCCGCAT GGGAGGAGAT
GAATTTACCC TTATACTTCA AGACTGTAGC TGTAAAGAAG AAATTCAACT CTTTGCTGAA
CAAATTCTGA GTCTATTTGA CAGCCCTTTT GAAATCGAAG GGCAAAAATT CTTCCTTGGC
ACAAGTATTG GTATTGCTCT TTTCCCTACC CATAGTGATC AGGCAACGCA ATTAATAAGC
TTGGCAGATA CCGCCATGTA CTGCGCTAAA AAGAGCCCGC CACATTTAGT GTTTTATGAC
AAATCAATGA GTCAAGCGGC TGAAATAAAG CTGAAACTGA TTAATAGTTT AAGACATGCG
CATAGCCTAA AACAGTTCAA ATTAGTTTAT CAGGCTATCG TAGACTTACA CACAAACCAA
ACCATCGCGG CGGAGGCTTT ACTGCGCTGG CAAAAATCTC CCACTGAGCA CTATGAGGCT
TCAGAATTTG TCCCGCTACT CGAAGAAACA GGGTTAATTG TTAACATCGG CCAATGGGTA
CTCGAACAAG CCTGCCAACA AGCAACACTT TGGCGATCAC AGTATCAATC TGATTTTAAA
ATTTCGGTCA ATGTCTCACC ACTACAGCTA GAGCATGTCG ATTTTGTTGA ACAAGTGATA
AATGCCTTAG AAATGGCAGC GCTACCCGCC GATGCATTGA TTTTAGAGAT CACCGAATCA
GCACTGCTGC GTCAACCTGA ACAAGCGAGA TTAACGCTTA ATCGCATCAA ATCACTAGGT
GTTAGTATTG CCATTGATGA CTTTGGGACA GGACTATCTT CACTTAGCCG CTTGGGTACC
TTACCGATTG ATAGCGTAAA AATAGATGCA GAATTTGCCC TACGTTTAAA CGATATCTCA
GGGCAAAAAC TCTGCTATGC CATCGTGCAA TTGGCACAGG CGCTAGATAT TCATTTTGTG
GCGGAAGGAA TTGAAACACA ACAACAAAAA GACATCATGA CCGACATGGG ACAAGGATTT
GCTCAGGGAT TTTTATTTGG TTACCCCAGT GCTGTCGAAC ACTTCACCCA AACCTTTTTA
GTCGAAAAAC ACATCGCCTA G
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| Protein sequence | MIRWQHLLNK LSTDDPVLRE KLSLWQTHPD QTPLALIQGF SFISANRATL NYFGTHYDAF
VNATPYDFSP RIQSSGRNSV EFAREMILEA IAGNHVEFNW LHLNQQGREL PTRINLYRCY
LQQQPVVLVE LQALNRRNHV REAITDGFAH IPKEILSTTL EESAEAVYIT DDDNRILAVN
KAMCRICGYS AEQLISHTPA MLESRNLSQG EETDCQLAIK QRGSWQGETL KKRSNGSTFP
AWQSSRRIVV DGETPYHVNI FSDISTQKQL ETQLTTRAMY DTLTGLPNRF HLKQLLNSAL
EKLQTDPNLL GALMFLDLNG FKNINDSFGH SMGDRVLQLV AARLEAGCIE KADIARMGGD
EFTLILQDCS CKEEIQLFAE QILSLFDSPF EIEGQKFFLG TSIGIALFPT HSDQATQLIS
LADTAMYCAK KSPPHLVFYD KSMSQAAEIK LKLINSLRHA HSLKQFKLVY QAIVDLHTNQ
TIAAEALLRW QKSPTEHYEA SEFVPLLEET GLIVNIGQWV LEQACQQATL WRSQYQSDFK
ISVNVSPLQL EHVDFVEQVI NALEMAALPA DALILEITES ALLRQPEQAR LTLNRIKSLG
VSIAIDDFGT GLSSLSRLGT LPIDSVKIDA EFALRLNDIS GQKLCYAIVQ LAQALDIHFV
AEGIETQQQK DIMTDMGQGF AQGFLFGYPS AVEHFTQTFL VEKHIA
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