| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sputcn32_0124 |
|---|
| Symbol | |
|---|
| ID | 5078950 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella putrefaciens CN-32 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009438 |
|---|
| Strand | + |
|---|
| Start bp | 140628 |
|---|
| End bp | 141221 |
|---|
| Gene Length | 594 bp |
|---|
| Protein Length | 197 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 640497244 |
|---|
| Product | multiple antibiotic resistance (MarC)-related protein |
|---|
| Protein accession | YP_001181659 |
|---|
| Protein GI | 146291235 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG2095] Multiple antibiotic transporter |
|---|
| TIGRFAM ID | [TIGR00427] membrane protein, MarC family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.0309852 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGATATAT TTTCTGCTGC GGTAATGTTA TTTCTGATTA TGGACCCTCT CGGGAATTTG
CCGATTTTCG CCTCGATTCT ACGTCATATC GAGCCTAAAA AACGTCGTAA AGTATTGATC
CGCGAGCTAC TCTTCGCTTT AGTTATCATG CTCGCCTTCC TCTATGCAGG CGAAGCTATC
TTAAGTTTCC TCAATTTACG CTCCGAGTCC GTGAGTATTG CTGGCGGGAT TATTTTGTTC
CTGATTGCAA TTAAAATGAT TTTCCCTCAA CCCGGTGGTG TTGTGGGGTT AGCGGCAGGT
GAAGAGCCTT TTATTGTGCC AATGGCGATC CCCTTGATGG CGGGGCCATC TATCTTAGCC
GCACTTATTT TACTCGCCCA TACCGATGGC TCTCGTATGG GGGATTGGAC GATTGCCTTA
GTGTCGGCTT GGGCTGCAAG TGCGGTTATC TTGATGTTTT ATAAGCTCTT CACTCGTATG
TTAGGTGAGA AGGGTTTAAC TGCCGTCGAG CGTCTTATGG GTATGGTGCT CGTGATGATA
TCGGTGCAAA TGTTCCTCGA TGGTGTTTCA AATTATATGA AAACGACGGG ATAA
|
|---|
| Protein sequence | MDIFSAAVML FLIMDPLGNL PIFASILRHI EPKKRRKVLI RELLFALVIM LAFLYAGEAI
LSFLNLRSES VSIAGGIILF LIAIKMIFPQ PGGVVGLAAG EEPFIVPMAI PLMAGPSILA
ALILLAHTDG SRMGDWTIAL VSAWAASAVI LMFYKLFTRM LGEKGLTAVE RLMGMVLVMI
SVQMFLDGVS NYMKTTG
|
|---|
| |