| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spro_2392 |
|---|
| Symbol | |
|---|
| ID | 5602531 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Serratia proteamaculans 568 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009832 |
|---|
| Strand | - |
|---|
| Start bp | 2612844 |
|---|
| End bp | 2614802 |
|---|
| Gene Length | 1959 bp |
|---|
| Protein Length | 652 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 640937931 |
|---|
| Product | PAS modulated sigma54 specific transcriptional regulator |
|---|
| Protein accession | YP_001478621 |
|---|
| Protein GI | 157370632 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 33 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCTACCG CCGCAGACCT GCTGCCAATC AAAGATGAGA GCGATCCGAT TTTCAGCCTG
CCGGAAGGGC CGGAGGCCGG TGAATGGGAC AGCCTGTTTT GGCAAGGCTG GCAGGCATTT
AACGAAGGGA GTCAACCGGG CTGGATACGC AAGTCAATCC TGCAATCCTG GCGGCGCTCG
CGTGAGTACG GTATTGATCC TGATGAGTTT GTCTATCACG CACCGCCGGC AGAACAACTA
CAGGCCATCC TGTTGCACAA CACCGGGCTG ATTAGCGTGG CGCGCAGCAT CATGGAAAAT
CTGTTGGCCT ATAATCCCGA CGGCCATATC AATCTGACCG ATGCCCACGG CGTTACCCTT
CACTACTGCG GTGCGGACAT GACGCCGGTC GGCAGTATTC TGCGTGAAGA GGTTCAGGGC
ACCAATTGCA CCGCACGCTG CCTGCTGGAA CAGCGACTGG TGTATGTGTT AAGCGGCGAA
AACTGGAAGA TGGGGCTGCG CCAGCGTCAT CGCCAGTGTG CCGCCGCACC GGTACGTAAC
GCCGAGGGAG TGATGATTGG CGTGCTGACC CTCACCGCTA CGCCGGATAA TTTCAATGCC
CACACGCTGG GCACCGTGCA GGCAGCGGCG GAGGCCGTCG GTCAACAGCT CAAGCTGCAG
CAACTCCTGG CAGAACAGCA GTCCATTCTG GAAACCCTGA ATGAAGGCGT GATGGTTTGC
GATCGCCAGG GCCGTCTGAA AACCGTTAAT CGCTATGCGC GCCAGATTTT TGACGGTCTG
GAGCCGGGCA ACAAATCAAT CGATGAGCTG CTGCGCCCGC AGTCCGGCTC GCTGCTGGCC
ATGCCATTTT GTAACGATCG TGAAATGGTA TTTATGCCAG CCGGTAAACC GGCCCTCTCC
TGCGTCATTT CATTGATGCC TGCGCCGGAT GACGGTCGGG TGCTTTCAGT ACGTGAGAAT
CAGCGTATCC GTGCCATTAC TCGCCGCGTC ATGGGGGTTA GCGCCAGTTA TACCTTTGAG
ATGATATATG GCCACTCCAG CCGTATGCGC GAGGCGATCA TGCAGGCGCG CACCTGCAGT
CGCAGTGACA GCACGGTATT GTTGACCGGC GAAAGCGGCA CCGGCAAGGA GCTGTTTGCC
CAGGCAATCC ACAATGCTGG CGGACGTTGC AACGAGCCCT TTGTCGCCGT CAACTGCGGT
GCCTTACCGC GCGATTTGGT GCAGAGCGAG CTGTTTGGTT ATGTGGACGG TGCCTTTACC
GGTTCGCGCC GAGGGGGAGC CGCCGGCAAG TTCGAACTGG CGGACGGGGG CACCCTGCTG
CTGGATGAAA TTGGTGAAAT GCCGCTGGAA GCCCAAACCA GCCTGCTGCG CGTGCTGCAG
GAAAGCGAAG TGTTGCGCAT TGGTGCGGCG CAGCCGGTAA AAGTGAATGT GCGCATCATT
GCCGCCACCC ATTGCGACCT GGTGCAGGCG GTGGAGACAG GCGCGTTTCG CCGCGATCTC
TATTACCGTT TGAACGTGCT CTCGATCCCG GTTCCGCCGC TGCGTGAACG TCGGGACGAC
ATCGCCGGTC TGGTCAACGG CTTTATTCAC AAGCTTAGTG CGCGGATGAA AAAAGTCCCA
CCGCAGGTTT CGCCAACGGC GATGGCCTGC CTCAACGCCT GGCATTGGCC GGGCAACGTG
CGCGAACTGG AAAACCTGGT GGAGCGGATG GTAAACCTGT GTGAAGGATT ACTGATTGAT
CTAGGCGACC TGCCCGAGGA TATTCGCCGC ATTGCGCCTG AACCGGCCCC GCTCCCCTCC
AGCCGGTTGG AAGACCATGA GCGCATACAT ATCATTCAGG TCATTGAAAC CAACGGCGGC
AATTTGAGGC AGGCCGCCCA GATGCTAGGG CTGTCGCGCA CTACGCTGTA CAACAAAATC
AATAAGTGGC AGATCGATTT GACGCTTTTG CGCCCCTGA
|
|---|
| Protein sequence | MPTAADLLPI KDESDPIFSL PEGPEAGEWD SLFWQGWQAF NEGSQPGWIR KSILQSWRRS
REYGIDPDEF VYHAPPAEQL QAILLHNTGL ISVARSIMEN LLAYNPDGHI NLTDAHGVTL
HYCGADMTPV GSILREEVQG TNCTARCLLE QRLVYVLSGE NWKMGLRQRH RQCAAAPVRN
AEGVMIGVLT LTATPDNFNA HTLGTVQAAA EAVGQQLKLQ QLLAEQQSIL ETLNEGVMVC
DRQGRLKTVN RYARQIFDGL EPGNKSIDEL LRPQSGSLLA MPFCNDREMV FMPAGKPALS
CVISLMPAPD DGRVLSVREN QRIRAITRRV MGVSASYTFE MIYGHSSRMR EAIMQARTCS
RSDSTVLLTG ESGTGKELFA QAIHNAGGRC NEPFVAVNCG ALPRDLVQSE LFGYVDGAFT
GSRRGGAAGK FELADGGTLL LDEIGEMPLE AQTSLLRVLQ ESEVLRIGAA QPVKVNVRII
AATHCDLVQA VETGAFRRDL YYRLNVLSIP VPPLRERRDD IAGLVNGFIH KLSARMKKVP
PQVSPTAMAC LNAWHWPGNV RELENLVERM VNLCEGLLID LGDLPEDIRR IAPEPAPLPS
SRLEDHERIH IIQVIETNGG NLRQAAQMLG LSRTTLYNKI NKWQIDLTLL RP
|
|---|
| |