| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spro_1333 |
|---|
| Symbol | |
|---|
| ID | 5605685 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Serratia proteamaculans 568 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009832 |
|---|
| Strand | - |
|---|
| Start bp | 1463735 |
|---|
| End bp | 1465342 |
|---|
| Gene Length | 1608 bp |
|---|
| Protein Length | 535 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 640936865 |
|---|
| Product | major facilitator transporter |
|---|
| Protein accession | YP_001477565 |
|---|
| Protein GI | 157369576 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 28 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATGCTC AGCCTGCGCC TGCCGTCGCT GCGCCGCATC CTTTTACCCT GCGTCTGGCT
GTGGGGTTGG TGGGTGTGCT GATTGCCGCC CTGACCTCAG GACTCAATGA TCGCATCAGC
GATTTGGCGC TGGCGGATAT CCGCGCGGCT ATCGGTATCG GTTTCGACCA GGGGAGCTGG
ATCACCTCGG CCTATCAGGC CGCGGAAGTG TCGGCCATGA TGGTGGCCCC CTGGTTTGCC
GTGACCTTTT CGCTACGCCG TTTCGCCCTG GTGATGATCG GCGGTTTTGC CGCCGTCGGC
GTACTCCAGC CGTTAACTGC TGATCCCACG CTGTTTATTG CTCTGCGGGT GGTGCAAGGC
CTGTTTGGCG GGGCATTGCC GCCGTTGCTG ATGACGGTGG CGCTGCGTTT TCTGCCCCCG
ACCATCAAAC TTTACGGGCT GGCCGCCTAT GCGCTCACCG CCACCTTTGG CCCCAATGTC
GCGGCACCGC TGGCGGCGCT GTGGACCGAC AGTCTGGGTT GGCAGTTTGT CTTTTGGCAG
GCGATCCCGC TGTGTCTGAT AGCCTCCTTA CTGATCGGCT GGGGGTTGCC GCAGGATCCC
TTGCGGCTGG AGCGTTTCCG CCAGATTGAT CTGTTCGGCA TGCTGACCGG TTGTAGCGGT
ATTGCGCTGT TGATTCTCTC GCTGACTCAG GGTGAGCGGC TAGACTGGTT CAATTCACCC
TTAATTAGCC TGATGCTGCC GGTTTCCATT GCGTTGTTGG TGACGTTTTT AATCAACGAA
TGGTTCCATC CGTTGCCGCT GTTAAAACTG CAATTACTGC GGCGCATCAA TCTTTCTTAT
AGCCTGCTGA CGCTGGCTGG CGTGCTGTTG CTGGCGTTGT CAGGCTCAAT GCTGCCGTCG
TTTTACTTTT CGCAGGTGGA GGGTTTTCGC ACCGTACAAT TTGCGCCGCT GGCGTTAGCC
GTCGGCCTGC CGCAGTTGGT GATAGCCCCT TTAATCGCCG CCCTGTTGAA CCTGCGCTGG
ATAGACGCCC GTTGGGTGCT GACTATCGGT GCCGCGCTAA TCGCCGTCTC CTGCCTGCTG
GGAATGCAAT TGACCGACGA TTGGGCACGA GAAAACTTCT GGCTGATCCA AGGCCTGCAG
GCATTTGGCC AGCCGATGAT GATTTTACCG GTGTTAATGA CCTCTACCAG CGTGATCCTG
CCACCGGAAG GGCCTTTTGC CTCGGCCATG TTTAACACCG TGCGCGGTTT TTCCGCCGTG
GCGGCGGGCA GCCTGGTCGA GAATTTTATT AGCTACCGAG AGCAATTTCA CTCTCATGTG
CTGGTTGACC GCCTGGGCAA TCGCCCGTGG CTGATGACGG CAGAGAGCTC AGAACACGCC
AGCGGGGCTA TGCCGCTGTT ACCGGACGGC TCGGTCAGTT CAGCGGAAAA TCTCGGGCAT
TTTTCGACGT TGGTAAAGCA TCAGGCGGTG ATCCTCAGTA TCAGTGACGC CTACCTGCTG
ATTATTGGCT GTGCGCTGCT TTTGGTGTTG CTGACCGCCT GGTTGCCGAA GCGTGTCTAT
CCGCCGCAAA CGCTCTTACC TCTAGTTCCA AAAACATCAG GATCATAA
|
|---|
| Protein sequence | MNAQPAPAVA APHPFTLRLA VGLVGVLIAA LTSGLNDRIS DLALADIRAA IGIGFDQGSW
ITSAYQAAEV SAMMVAPWFA VTFSLRRFAL VMIGGFAAVG VLQPLTADPT LFIALRVVQG
LFGGALPPLL MTVALRFLPP TIKLYGLAAY ALTATFGPNV AAPLAALWTD SLGWQFVFWQ
AIPLCLIASL LIGWGLPQDP LRLERFRQID LFGMLTGCSG IALLILSLTQ GERLDWFNSP
LISLMLPVSI ALLVTFLINE WFHPLPLLKL QLLRRINLSY SLLTLAGVLL LALSGSMLPS
FYFSQVEGFR TVQFAPLALA VGLPQLVIAP LIAALLNLRW IDARWVLTIG AALIAVSCLL
GMQLTDDWAR ENFWLIQGLQ AFGQPMMILP VLMTSTSVIL PPEGPFASAM FNTVRGFSAV
AAGSLVENFI SYREQFHSHV LVDRLGNRPW LMTAESSEHA SGAMPLLPDG SVSSAENLGH
FSTLVKHQAV ILSISDAYLL IIGCALLLVL LTAWLPKRVY PPQTLLPLVP KTSGS
|
|---|
| |