| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spro_0884 |
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| Symbol | rluD |
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| ID | 5602954 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Serratia proteamaculans 568 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009832 |
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| Strand | + |
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| Start bp | 978450 |
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| End bp | 979427 |
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| Gene Length | 978 bp |
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| Protein Length | 325 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 640936399 |
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| Product | 23S rRNA pseudouridine synthase D |
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| Protein accession | YP_001477118 |
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| Protein GI | 157369129 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
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| TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.0692792 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.0818759 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCACAAC AAGTACAACT CACCGCAACG GTGGCCGAAT CTCAACTCGG ACAACGTTTA
GATCAGGCTT TGGCCGAATT GTTCCCTGAT TATTCACGAT CTCGCATAAA AGATTGGATC
CTGGACAATC GGGTACAGGT TAATGGCAAA ACGATAAACA AACCGAAAGA GAAGGTACTG
GGGGGAGAGA CGGTCGCCAT TGATGCACAG ATAGAAGAAG ACGCCCGTTG GGAACCGCAG
GACATCGCGC TGAATATCGT CTACGAAGAC AGTGACATTC TGGTCATCAA CAAGCCACGC
GACCTGGTCG TGCACCCTGG CGCCGGCAAT CCGGATGGCA CGGTGCTCAA TGCGTTGCTG
CACTACTATC CTGAAATTGC CGATGTGCCG CGTGCCGGTA TCGTGCACCG TCTGGACAAG
GACACTACCG GTTTGATGGT CGTGGCCAAA ACCGTTCCGG CGCAAACCCG ACTGGTAGAA
GCGCTGCAGG CGCGTGATAT TACCCGTGAA TATGAAGCGG TCGCCATTGG CACCATGACC
GCCGGCGGTA CTGTCGAAGA GCCAATTTCG CGCCATTCGA CCAAGCGCAC CCATATGGCA
GTGCACCCGA TGGGTAAACC CGCGGTGACG CATTACCGTA TTATGGAGCA CTTCCGTGCG
CACACGCGCC TGCGCCTGCG CCTGGAAACC GGCCGTACTC ACCAGATCCG TGTGCATATG
TCGCATATCA ACCATCCGTT GGTGGGGGAT CAGCTGTACG GTGGCCGTCC GCGTCCGCCA
AAAGGTGCGT CGGATGCATT TATTGCCACG CTGCGCGGTT TCGATCGCCA GGCACTGCAC
GCTACCATGC TGCGTTTATA TCATCCAATC AGCGGTATCC AGATGGAGTG GCACGCGCCG
CTGCCTCAGG ATATGGTCGA TTTGATTAAC GCGCTGAAAG CCGATACTGA AGAATTTAAA
GATCAGATGA ACTGGTAA
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| Protein sequence | MAQQVQLTAT VAESQLGQRL DQALAELFPD YSRSRIKDWI LDNRVQVNGK TINKPKEKVL
GGETVAIDAQ IEEDARWEPQ DIALNIVYED SDILVINKPR DLVVHPGAGN PDGTVLNALL
HYYPEIADVP RAGIVHRLDK DTTGLMVVAK TVPAQTRLVE ALQARDITRE YEAVAIGTMT
AGGTVEEPIS RHSTKRTHMA VHPMGKPAVT HYRIMEHFRA HTRLRLRLET GRTHQIRVHM
SHINHPLVGD QLYGGRPRPP KGASDAFIAT LRGFDRQALH ATMLRLYHPI SGIQMEWHAP
LPQDMVDLIN ALKADTEEFK DQMNW
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