| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_4060 |
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| Symbol | |
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| ID | 5664444 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella pealeana ATCC 700345 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009901 |
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| Strand | - |
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| Start bp | 4934084 |
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| End bp | 4937242 |
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| Gene Length | 3159 bp |
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| Protein Length | 1052 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 641238724 |
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| Product | hydrophobe/amphiphile efflux-1 (HAE1) family protein |
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| Protein accession | YP_001503905 |
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| Protein GI | 157963871 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0841] Cation/multidrug efflux pump |
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| TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family
[TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.00709591 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCACGTT TCTTTATCGA TCGCCCTATT TTTGCATGGG TGATCGCTAT TATTGTGATG
CTGGCAGGTG TGCTCTCAAT TGTGGGCTTA CCGGTATCGC AATACCCGAG CATTGCACCG
CCGTCGGTGG TGATCAGTGC TGTTTATCCT GGTGCTTCGG CTAAGACGAT GGAAGACTCG
GTAACTCAGG TTATTGAGCA GCGAATGACA GGTATTGACC ACCTTCGCTA CATTACATCG
ACCAGTGATA GCTTTGGTAA TGCGCAAATT ACCTTAACGT TTAATGCTGA AGCCGATCCT
GATATCGCGC AGGTACAGGT GCAGAACAAG CTACAGCTTG CAATGCCGCT GTTACCGCAA
GAAGTTCAGG CGCAAGGTGT TAACGTAAGT AAGTCGAGTG CGGGTTTCTT GATGGTAGCG
GCTTTCGTAT CACAAGACGG TTCACTTGAT AAAAACGATA TCGCCGATTA CGTAGGTTCT
AATATTCAGG ATCCGCTAAG TCGTGTTCCT GGTGTGGGTA CTATCGAGCT ATTTGGCGCA
CAATATGCGA TGCGTATATG GCTAGACCCA CTAAAACTGA CTCAATATAA CCTGACCAGC
CAAGACATTA TCTCTTCAAT TAGAGAGCAA AATGCTCAGG TGTCAGCAGG CCAGTTAGGT
GGTGCACCAT CAGTTGCAGG CCAAGAGCTT AACGCAACGG TATCGGCTCA GAGTCGTCTA
CAGACAGCGG ATCAATTTAA AAAGATCATC ATCAAAGCTG ACACTTCAGG CGCCAAAGTA
TTCCTTGAAG ATGTGGCTCG TGTTGAACTG GGTGCAGAAA GCTATGCGGT TGAGTCGTTT
TATAACGGTA AAGCTGCTGC GGGTGTTGGT ATTCAGTTAG CAACCGGTGC TAACGCATTG
GCAACAGCCG AAGGCGTGCG TGCAAAAATC AATGAGATGA AGCCATTCTT CCCTGATGGG
ATGGAAGTGG TTTATCCCTA CGACACAACT CCATTCGTTG AGAAATCAAT TGAAGGCGTT
GTACATACCC TGCTGGAAGC GGTTGTTTTA GTATTTTTAA TTATGTATCT GTTCCTGCAG
AACTTCCGTG CAACGCTAAT CCCAACGATT GCGGTGCCAG TAGTACTACT GGGTACATTT
GCTATTTTGG CCGCTGCAGG CTTCTCGATT AACACGCTAA CCATGTTCGC TATGGTGCTG
GCAATTGGTC TTCTGGTGGA TGACGCGATT GTTGTAGTGG AGAACGTTGA GCGTGTAATG
CAAGAAGAGG GACTGAGTCC CGTTGAAGCG ACTAAGAAAT CGATGGACCA AATCACTGGT
GCGCTAGTGG GTATTGGTTT AACGCTTTCA GCGGTATTTG TTCCAATGGC ATTTATGTCT
GGTTCAACGG GTGTTATTTA TCGTCAGTTC TCGATTACGA TTGTGTCTGC AATGGCGCTG
TCTGTAATGG TGGCGATCAT TCTAACTCCA GCACTTTGTG CGACCATGTT GAAGCCGATT
GCAAAAGGTG AAAGCCACGC AAAAACGGGT TTCTTTGGTT GGTTTAACCG TAAGTTTGAT
GCATTAACGT CTCGTTATGA GTCAAGTGTT GCGGCAATGA TTAAGCGTAC TGGCCGTACT
ATGATGGTTT ACCTAGCAAT TACGGTTGCA GTGGGTTGGA TCTTCATGCG TATGCCTACC
GCATTCTTAC CAGACGAAGA CCAAGGTATC TTGTTCACTC AGGCTATTTT GCCTGTGAAC
TCGACGCAGC AAGAAACTAA GGCAGTACTT GAGCGTGTTA CTGATTTTTA CTTGAATGAA
GAAGGCGAGA ACGTTAAGTC AGTATTTAGC GTATCGGGTT TCAGTTTTGC GGGTAATGGT
CAAAACATGG GTATTGCGTT CGTCGGCCTT AAAGACTGGG CTGAGCGTAG CGAACCGGGT
CAAGACGTAC AGTCAGTTGC TAACCGTGCC ATGGGTATGT TTATGGGGAT GAAAGAAGCC
TTCGTATTCG CCTTTGTACC GCCAGCAGTT ATCGAGCTGG GTACGGCTAA CGGTTTCGAC
TTCTACTTGC AGGATAAGAA TGGCCAAGGC CATGCCAAGC TTGTTGAAGC ACGTAACATG
TTGCTGGGTA TGGCTGCACA GAACCCTAAC CTAGTGGGCG TTCGTCCAAA TGGTCAGGAA
GATGCACCGC TTTATCAAGT TCATATCGAT CACGGTAAGT TACGTGCATT AGGCGTTGAT
ATTGACTCAG TCAATAGCGT ACTGGGTACA GCTTGGGGTG GTAATTACGT GAATGACTTT
ATCGACCGTG GTCGTGTGAA GAAAGTTTAC GTGCAAGGTG AAGCTGAATA CCGTATGCAG
CCAGAAGATC TCGACTCTTG GTATGTGCGT AACGACAAAG GCGAAATGGT ACCTTTCTCG
GCATTTGCAT CGGGTAGTTG GCAATATGGT TCACCGCGTC TAGAGCGTTT TGGTGGTTTG
CCAGCTATGA ATATCCAAGG TGGTACAGCA CCAGGTTACA GTACAGGTGC AGCGATGGAT
GACATCGAGG CTATGGCTAA GAAGCTACCA CCAGGATTTG GTATCGAATG GAACGGTCTT
TCTTATGAAG AACGTCTATC GGGTAATCAG GCGCCAATGC TATATGCCTT GTCGATTGTG
GTGGTATTCC TAGTACTTGC AGCACTATAC GAGAGCTGGT CAGTACCATT TGCGGTAGTA
CTCGTTGTGC CTCTGGGTAT TATCGGTGCC TTGATTGCGA TGAATGGTCG TGGTTTACCA
AACGACGTAT TCTTCCAGGT AGGTCTATTG ACGACTGTGG GTCTAGCAAC CAAGAACGCC
ATCTTGATTG TGGAATTTGC TAAAGAATTC TACGAGAAAG GCGCAGGTCT TGTTGAAGCC
ACACTACACG CGGTTCGAGT GCGTTTACGT CCAATCTTAA TGACGTCTTT AGCATTCGGT
CTAGGTGTTG TGCCACTAGC CATCAGTAGC GGTGTAGGTT CTGGTAGCCA GAACGCCATC
GGTACAGCGG TACTGGGCGG TATGATGAGC TCGACCTTTA TGGGGATCTT CTTTATCCCA
ATCTTCTTCG TGATTGTTGA GCGTATGTTC AGCAAGCGCG AGCGAGATGC CGCGAAAGCA
ATAAAGGCTG AAGCCAAAGC AGCTAAAGCG AACAAATAA
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| Protein sequence | MARFFIDRPI FAWVIAIIVM LAGVLSIVGL PVSQYPSIAP PSVVISAVYP GASAKTMEDS
VTQVIEQRMT GIDHLRYITS TSDSFGNAQI TLTFNAEADP DIAQVQVQNK LQLAMPLLPQ
EVQAQGVNVS KSSAGFLMVA AFVSQDGSLD KNDIADYVGS NIQDPLSRVP GVGTIELFGA
QYAMRIWLDP LKLTQYNLTS QDIISSIREQ NAQVSAGQLG GAPSVAGQEL NATVSAQSRL
QTADQFKKII IKADTSGAKV FLEDVARVEL GAESYAVESF YNGKAAAGVG IQLATGANAL
ATAEGVRAKI NEMKPFFPDG MEVVYPYDTT PFVEKSIEGV VHTLLEAVVL VFLIMYLFLQ
NFRATLIPTI AVPVVLLGTF AILAAAGFSI NTLTMFAMVL AIGLLVDDAI VVVENVERVM
QEEGLSPVEA TKKSMDQITG ALVGIGLTLS AVFVPMAFMS GSTGVIYRQF SITIVSAMAL
SVMVAIILTP ALCATMLKPI AKGESHAKTG FFGWFNRKFD ALTSRYESSV AAMIKRTGRT
MMVYLAITVA VGWIFMRMPT AFLPDEDQGI LFTQAILPVN STQQETKAVL ERVTDFYLNE
EGENVKSVFS VSGFSFAGNG QNMGIAFVGL KDWAERSEPG QDVQSVANRA MGMFMGMKEA
FVFAFVPPAV IELGTANGFD FYLQDKNGQG HAKLVEARNM LLGMAAQNPN LVGVRPNGQE
DAPLYQVHID HGKLRALGVD IDSVNSVLGT AWGGNYVNDF IDRGRVKKVY VQGEAEYRMQ
PEDLDSWYVR NDKGEMVPFS AFASGSWQYG SPRLERFGGL PAMNIQGGTA PGYSTGAAMD
DIEAMAKKLP PGFGIEWNGL SYEERLSGNQ APMLYALSIV VVFLVLAALY ESWSVPFAVV
LVVPLGIIGA LIAMNGRGLP NDVFFQVGLL TTVGLATKNA ILIVEFAKEF YEKGAGLVEA
TLHAVRVRLR PILMTSLAFG LGVVPLAISS GVGSGSQNAI GTAVLGGMMS STFMGIFFIP
IFFVIVERMF SKRERDAAKA IKAEAKAAKA NK
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