| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_3166 |
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| Symbol | |
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| ID | 5663555 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella pealeana ATCC 700345 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009901 |
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| Strand | - |
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| Start bp | 3877760 |
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| End bp | 3878731 |
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| Gene Length | 972 bp |
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| Protein Length | 323 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 641237824 |
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| Product | RluA family pseudouridine synthase |
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| Protein accession | YP_001503017 |
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| Protein GI | 157962983 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
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| TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.133464 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGACACAAG AGATTAATCT AAAAAGCGAG ATCACAGCAA CACAAACCGG GCAAAGATTA
GACCAAACTT TGGCTGATTT GTTCCCTGAC TACTCTCGCA CACGTATTAA AGAGTGGATT
TTATCAGGTT CAGTCTTTAT TGATGGTGAG ACTTCTGACA AGCCTAGATT CAAAGTGCTT
GAAGGTCAGG TTGTGACTAT TGGCGCCACG CTTGAAGAAG AAACTAAAGC TGAAGCTGAA
GCGATTGACT TAGATATCAT CTATGAAGAT GACCATATTT TGGTGATCAA CAAGCAAGCG
GGCTTAGTGG TTCACCCTGG TGCGGGTAAC CAAAGTGGTA CCTTGATGAA TGCGTTATTG
CATCATTGCC CTGGTATTGA GTTAGTTCCA CGTGCAGGTA TTGTTCACCG TCTGGATAAA
GACACCACAG GTTTGATGGT GGTGGCTAAG ACAGTTGAAG CTCAGACTCA TCTAGTGACG
GCGCTACAGG CTCGTGAAAT TACTCGTGAA TACGAAGCGA TTGTCACAGG CACTATTATT
GCTGGTGGTA CAGTTGATGA GCCAATCGAC CGTCACCCGA CTAAGCGTAC TCATATGGCA
GTTGTCCATA ATGGTAAGCC TGCGATGACT CACTACCGCG TAGCGGAGAA GTTTAGAGCA
CATACACGTT TGAGACTACG TCTTGAATCT GGTCGTACTC ACCAAATTCG TGTACATATG
GCACATATTG GCCACGTTTT GGTTGGTGAT CCAGTTTACG CTGGTCGTCC ACGTCCGCCA
AAAGGTGCAG CCCCTGATTT CTTTGAGACC TATATGGGCT TTAGACGTCA AGCTCTGCAT
GCTGTAAGAC TTGAGTTAGC GCATCCATTT ACATGTGAAA TCATGAGCTG GCAAGCACCT
ATCCCTGAGG ATATGGTTAA GCTGACTAGA GCGCTGCGTA AAGACACTGA AGAAAACCCT
ACAGTGTATT AA
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| Protein sequence | MTQEINLKSE ITATQTGQRL DQTLADLFPD YSRTRIKEWI LSGSVFIDGE TSDKPRFKVL
EGQVVTIGAT LEEETKAEAE AIDLDIIYED DHILVINKQA GLVVHPGAGN QSGTLMNALL
HHCPGIELVP RAGIVHRLDK DTTGLMVVAK TVEAQTHLVT ALQAREITRE YEAIVTGTII
AGGTVDEPID RHPTKRTHMA VVHNGKPAMT HYRVAEKFRA HTRLRLRLES GRTHQIRVHM
AHIGHVLVGD PVYAGRPRPP KGAAPDFFET YMGFRRQALH AVRLELAHPF TCEIMSWQAP
IPEDMVKLTR ALRKDTEENP TVY
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