| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_2842 |
|---|
| Symbol | |
|---|
| ID | 5663233 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella pealeana ATCC 700345 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009901 |
|---|
| Strand | - |
|---|
| Start bp | 3466161 |
|---|
| End bp | 3467645 |
|---|
| Gene Length | 1485 bp |
|---|
| Protein Length | 494 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 641237482 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001502695 |
|---|
| Protein GI | 157962661 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG4287] PhoPQ-activated pathogenicity-related protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAAAG CACTTCTTAG CATTGTAGTT TTCCTTATCT GCGTAACGCT CACTCTCTTT
CTATCTCGTG GAGCAATAAA GGACTATCTT TCATACCGCT TTATTGGCCC AGCCAGTTAT
TTTGACTTGG ATGAAATCAA GGACCAATCC ACGTTAGATG TGGAGATCAA GCAAGATAAA
ATAGTTGATA GTCAGTCACG TCCCGGCGAG AAGGTCAGAG TCATTAAGCT CTCTTTTACC
AGTCAGAAAT GGCACGGCTC TACTTGGAGG CACCCTGCAA CTATCTATGT TCCTGCTAAT
TACCAAGGTG AGGGGAATGT CGGCATCATT GCCACCAATC GTGCTTTCAA AGGTCAACAT
GAAACAGAGA GTACAACAGG GGGTCATCAA AATCAGGTTG TAGAATCTAA TGTCGTGCCT
GAACACTTGC GTCACCTTTT TGAACGTCAA AAAATACCGG GTACCGAATT AAATACTGAG
GCCGAATACG CTGAAGTAAC CGCGATAGAC TTGAATACAC CGATCATGAT ATTTCCAAAC
CCTGCCACGT TAATTTTTGA TAAGGACGAA AGTAATTTGA TGGGTTATGG CTTACAAATG
GCGATAGACA CATTTGATTT GAGCTGGATT GGTTATGTGC CTATTGCCAC AAGTTATTTA
AAAGCAATTA CCTTGCTTGA GTCGATTGAA GGGATAGCAG CAAAAAAGGC CGTCATTATG
GGCTGCTCTA AACGTGGTTT TGCCTCGTCA ATCGCCTTAG GGGCTGGTGA TGATCGCTTA
GCCGGTGTTA TGGCAACCTG TTATTACGGC GGTAATGTGC TTTACGACAT TATGAGAAAG
TTTGAATCGT TTGGCACTGA TATTGGTGGT CCTGCTGTTG AAAGAGACGG GCCGGCATTT
CAACCAGCTG ATAAGCTCTT AGCAAAAATG AATGGACCTG CGGGGAACTT GGCTACCATG
GCTTTTGACC CTTATCTCTG GAAGAAAAAG ATTAACACAC CTTATTTTGT CGCTCTGGGT
ACCAATGACG AGTTCTTTGG ACTAGGTGCA CCCAACGGTA TGATGAGTGA GCTTAAAGGC
GACAAAGCGT TTTTATATGT AGATAACCTA CGTCATTCAT GGGTTTCAAA GAAACACTTA
CATTCATGGC GCACTTGGCT AGCTCATGTA TTTTATGACC GCAAACTGCC TACAGTCGAA
GTTGAATCAC AAGTCGAAGG GTCGAAAGTC AATGTGATTG CAGATGTTGC ATCTTCAAAT
ACCTTGAAGC ATGTCCGCTT GTACTACTCC GTTAACCGCT CATTAGACTG GCGCGAAGCT
AAATGGGAAT TTAAAGCCAT GAAAATGGTC AATGGTAAAT TTCAGTCACA GCTTGAAAAA
ATTGACGGTA AAAACCTAGC TTACTATGTT GAGGTTGAAG ACTTCCATGA TAAAGGTGGT
ATCGGCTACT CAAGTTCTTT GGTAGAGATA AACCGAGCGA ACTAA
|
|---|
| Protein sequence | MKKALLSIVV FLICVTLTLF LSRGAIKDYL SYRFIGPASY FDLDEIKDQS TLDVEIKQDK
IVDSQSRPGE KVRVIKLSFT SQKWHGSTWR HPATIYVPAN YQGEGNVGII ATNRAFKGQH
ETESTTGGHQ NQVVESNVVP EHLRHLFERQ KIPGTELNTE AEYAEVTAID LNTPIMIFPN
PATLIFDKDE SNLMGYGLQM AIDTFDLSWI GYVPIATSYL KAITLLESIE GIAAKKAVIM
GCSKRGFASS IALGAGDDRL AGVMATCYYG GNVLYDIMRK FESFGTDIGG PAVERDGPAF
QPADKLLAKM NGPAGNLATM AFDPYLWKKK INTPYFVALG TNDEFFGLGA PNGMMSELKG
DKAFLYVDNL RHSWVSKKHL HSWRTWLAHV FYDRKLPTVE VESQVEGSKV NVIADVASSN
TLKHVRLYYS VNRSLDWREA KWEFKAMKMV NGKFQSQLEK IDGKNLAYYV EVEDFHDKGG
IGYSSSLVEI NRAN
|
|---|
| |