| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_2580 |
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| Symbol | |
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| ID | 5662973 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella pealeana ATCC 700345 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009901 |
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| Strand | - |
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| Start bp | 3140202 |
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| End bp | 3142163 |
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| Gene Length | 1962 bp |
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| Protein Length | 653 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 641237218 |
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| Product | diguanylate cyclase |
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| Protein accession | YP_001502435 |
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| Protein GI | 157962401 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGAAAAGA TCATTGTATT TGTTATTTTA TCGAGCATCA TGCTGTGCTC GTTTTCAGTT
CGAGCCGCAG AATTCTCCCC AATCAACACC ATCGAGACAT TTGACAATGG TCAGCAAATT
ATGGCCTTGT TTACTGATAA AGAACTAGAT GGTGAGTCGA AGCGTCTGCA ATTAAATCAG
CTGATTTCAC AAGCTCAAGT TAATCAGTCT GCTTATTATG CATTTGCTTA CTACCGGCTC
TTGCATGACA TTGAGTTGTC TGTTTCCGCG CCAGAGGCCG CAGAGTTGGC TATAGCAAGA
ATGCTGTTAT TAGGGCAAAG ACTGAATTCA GGCTGGTTGA TCGCCGAAGC TAAGATGTGG
CAGGCCACTT TTGCCGCTAA ACAGAGCCGC TTCGATGATG GGTTAGTATT GATCGATGAG
GCTATTCGAT TGTCAAAAGT AGTTAATTTT TCCCATCTGA CTGGGCGAGC ATATAATGTC
AAAGCTGCGC TTTATTTTTT CCAGGATCAG TACTACATCG CGCTTGAATA TTATTTGAGA
GCTCTGGATA TCTTTACAGC AACTCCAGAG GACCCCTATG TCAGTAAGGT ATTGTCTAAT
GTTGCTATTA TCTATGTTGA TTTAGAAGAT TGGGAAAAGG CCCTAGAGGC AAATAATAAT
GCTCTGGCAC ATGTTGATAA ATATGGTGGT AGTCACGAGC AGTTAGCAGC ATTCAATAAT
AATGCTTCCT TTATTTTAGG AAAACTTGGA CGCTGGAGTG AGAGTAAGCC CTACTTAATT
TCCTCACGAG AAAGTGCACT GTTAAGTGGT AATTTGCGAG TCAAATTAAA TGCTCAGACC
TCATGGATTC AATATTACCT CGCTCAAGGT GAATATCGTT TAGCCGTTGA AGAGGGGCTG
GAATGTGTGG ACATTGCTTT GGATAATCAA TACCCGTTGT TCGAAGGGGA TTGTAGTCGA
ATATTAGCGA AAGCCATGAT CAAGCTTGGG CAAGTCGATG AAGCCCTGCA ATTTTTAGCC
CATAGTGAAT CATTGTATAA ACGAATAAGA AAGCGCTCAG GGTTAGCCGA TACCTTTAAT
ACTTATGCAC TAGCCTATGA GGTAAAGGGG AATTATAAAG CCGCATTAGA CTATCAGCGA
AAGGCTAATG AAGAAGATAA GGCACTCTTG TTTGATCGAC GAGCCAAGAT GACATTTGAC
CTGGGTCAAC GTTATCAAGA TAAGTACCGT CAACAAGAAT TAGCCGTTTT AAAAGCCGAA
AATGATTTAC AAGAGTCTCG ATTCGCAGAG CAACAGCTAC GGGAGAAGTT CCTATTCTTT
TTTATTCTTG TTTCTGTTAT TTCGATCTTT CTGCTGATAA AGAAACGCTT CGGTTTAGAA
AATGATAATA AGAATCTGCA ATCCTCTAAC CTTGAGTTGT ATAAACAGTC ACATATCGAC
GCGCTAACAG GTTTATATAA TCGTCGTTAT TTCTCTGATT TTTTGGAGCA ACAGCATCAA
CTTTCGCAGA GTCAAAGCCT GATGATGAGT TTAGCCATTA TCGATATAGA CCATTTTAAG
AGCGTGAATG ACAGCTATGG TCATGATGTC GGTGATGAGG TGCTTATTCA GGTCGGTAAT
GTGATAAATA AGAATATTCG TGAGCGTGAT TTAATTATTC GATGGGGTGG AGAGGAGTTT
GTCCTGCTCT TGAGTTGGCC AATATCTTCA TATCCACAGA CAGGAGTTGA CTTGCTTGAA
CATTTTGAAC GTGTTCGTCA GGCTATTGAG AATACAGTTA TTGTTGTTGG TGAGTACAAA
TTGAAAGTAA CTATCTCAAT GGGAGTGGCG CAACCTCTAG GTGCGCTGGA TCTGATTGAA
TCATGGCATC ATGTACTTGA TGGCGCAGAC AAAGCGCTTT ATCGAGCCAA GAGACAAGGA
CGAAATTGTG TGGTGATTGC TAAGAAGGGC TCGCCGCTAT AG
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| Protein sequence | MEKIIVFVIL SSIMLCSFSV RAAEFSPINT IETFDNGQQI MALFTDKELD GESKRLQLNQ
LISQAQVNQS AYYAFAYYRL LHDIELSVSA PEAAELAIAR MLLLGQRLNS GWLIAEAKMW
QATFAAKQSR FDDGLVLIDE AIRLSKVVNF SHLTGRAYNV KAALYFFQDQ YYIALEYYLR
ALDIFTATPE DPYVSKVLSN VAIIYVDLED WEKALEANNN ALAHVDKYGG SHEQLAAFNN
NASFILGKLG RWSESKPYLI SSRESALLSG NLRVKLNAQT SWIQYYLAQG EYRLAVEEGL
ECVDIALDNQ YPLFEGDCSR ILAKAMIKLG QVDEALQFLA HSESLYKRIR KRSGLADTFN
TYALAYEVKG NYKAALDYQR KANEEDKALL FDRRAKMTFD LGQRYQDKYR QQELAVLKAE
NDLQESRFAE QQLREKFLFF FILVSVISIF LLIKKRFGLE NDNKNLQSSN LELYKQSHID
ALTGLYNRRY FSDFLEQQHQ LSQSQSLMMS LAIIDIDHFK SVNDSYGHDV GDEVLIQVGN
VINKNIRERD LIIRWGGEEF VLLLSWPISS YPQTGVDLLE HFERVRQAIE NTVIVVGEYK
LKVTISMGVA QPLGALDLIE SWHHVLDGAD KALYRAKRQG RNCVVIAKKG SPL
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