| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_2536 |
|---|
| Symbol | |
|---|
| ID | 5662929 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella pealeana ATCC 700345 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009901 |
|---|
| Strand | + |
|---|
| Start bp | 3088087 |
|---|
| End bp | 3088821 |
|---|
| Gene Length | 735 bp |
|---|
| Protein Length | 244 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 641237162 |
|---|
| Product | pseudouridine synthase |
|---|
| Protein accession | YP_001502391 |
|---|
| Protein GI | 157962357 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases |
|---|
| TIGRFAM ID | [TIGR00093] pseudouridine synthase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 34 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGACACAGC CATTTTCAAA AAACAGAACC AGCAACAAAT CGCCCAGTAA AAGCAATAAG
CCGGGCGGCT TCGGCAACGC TGCCAGCAAA CAAGCTGGAA ACGCTAAAGT CCAAGCAAGA
AGCGGACAGC CTCATAATAG AGTCAATAGC AAGACTAAGC CGAAAGCAAA ATCAGTTACC
AACCCAATAA TCGTGCTATT CAATAAACCT TTCGATGTAC TATGTCAGTT CACCGATGAG
CAAGGGCGGC AAACCCTTAA AGACTTTATC CCGATACCCG GCGTTTATGC CGCGGGTCGT
TTAGATAGAG ACAGTGAGGG CCTGCTTCTG TTGACCAACG ACGGTAAATT ACAATCACAA
ATTACCGAGC CTAAGAAGAA AACCTATAAA ACCTATTGGG CTCAAGTTGA AGGCGCACCT
AACGAGGATG ACCTTGAAAA ACTACGTCAA GGTGTTGAAT TAAAAGATGG TATGAGTTTA
CCAGCCAAAA TCAGCATTAT GAATAACCCA GACATTTGGC CAAGAACGCC GCCTATTCGT
GAGCGTGCGA ACATTCCTAC TACCTGGTTA GAAATTAAGA TCTGTGAAGG CAGAAACCGT
CAAGTGAGAC GCATGACGGC GCATATCGGT TTCCCTACAT TAAGATTGAT CCGCTATAAA
ATAGGTCAAT GGAGTCTAGA TGACCTAAAA AATGGTGAAT ATCGTCAACT TGAAATGAAT
AATAAGTCGG TGTGA
|
|---|
| Protein sequence | MTQPFSKNRT SNKSPSKSNK PGGFGNAASK QAGNAKVQAR SGQPHNRVNS KTKPKAKSVT
NPIIVLFNKP FDVLCQFTDE QGRQTLKDFI PIPGVYAAGR LDRDSEGLLL LTNDGKLQSQ
ITEPKKKTYK TYWAQVEGAP NEDDLEKLRQ GVELKDGMSL PAKISIMNNP DIWPRTPPIR
ERANIPTTWL EIKICEGRNR QVRRMTAHIG FPTLRLIRYK IGQWSLDDLK NGEYRQLEMN
NKSV
|
|---|
| |