| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_2375 |
|---|
| Symbol | |
|---|
| ID | 5662768 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella pealeana ATCC 700345 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009901 |
|---|
| Strand | - |
|---|
| Start bp | 2896373 |
|---|
| End bp | 2898793 |
|---|
| Gene Length | 2421 bp |
|---|
| Protein Length | 806 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 37% |
|---|
| IMG OID | 641236997 |
|---|
| Product | histidine kinase |
|---|
| Protein accession | YP_001502230 |
|---|
| Protein GI | 157962196 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0642] Signal transduction histidine kinase
[COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.824997 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCTTAAAC AGGGAAGTTG GTCCATAAAG ACATTTTTGC TAGCAGGAAG TGTCGCAATT
GTTATATTGC TCATTGTTAA TGTATCTATA ACTCAGTACG TGTCGAATAC TAAGTTGGAT
TTATCAAGGC TAGAAAATGA GGTTGTTGTA TCAGCCAATA CATTACTGAT GATACGGCGC
AGCGAAAAGG ATTTTATTAG TCGAATAGAC CCGAAGTATA CTTTTCAAGT ACTGGATTTT
AAAGCGAAAT TGGTACAGCA ATTAACTCAG ATTGATCGGT TGCTGACTCA AAGTAATTTA
GATATAAGCT ATAATAATCA ACGAGTATTA GAAGAGCTTG ATGATTATAT AGACACTTTT
TCTATGTTAA TTAATGAAAT ATACAGCATC AATGGTACCA GTGCTGAGCA AGGTTTACTC
GCACGGTTTG AACACAACTC TAATGAGCTC CAATTACTCA CTAATCAGTT AAAAGATACA
GAACTATTAG AACTTATTAT TGCCAATCAG CTAACAGTAT TTGATTTTTT TAAAAGTTTT
GACTCCAGGT TACTCACAAG GATTACTCAT CAGTTTAAAA TAATAGAACA GCACATTATA
GATAAACCTC AATCTACATT ACCGTTGCAA CAAGCATTTT TGTCATTTGA GCATGCTTTT
TTTCAGTTAC AGTCATCGAT GAAAAGGAGA GGTTACTCGG AGTCGTTAGG CTATCATGGA
ACGCTCAGGC AAAATGTTCA CAGTGTGGAA CGTAGTCTAG AAACTTTGTT TAATACGATC
CCGCTTAAAG TTGATAAAAG TGTTTCAGGG TTAGTCGTTA CCCAGTCTAT AGTAGAGCTG
CTATTAGTGC TCTTAATCAT TGGGATCCTA TATTATATTT TTTATGCCAT CACTAGGATG
GAGAAAGGGC TTATTTTCGC AAGAGAAAAA GAGCAACAGG CGAACAGTGC TAAAAGCTCA
TTTCTGGCTA ATATGTCTCA TGAAATTAGA ACGCCGCTCA ATGGTATCAT TGGTATGACA
GAGATTCTAA CGGACTCAAA ACTTACAGCG ATACAGAAAG ATTACCTTGC AACAATTAAC
TCGTCTTCTC AAACCTTATT AATGTTAATA AATGATATAT TAGATTTATC AAAAATTGAG
TCTGGCCACC TTGAGTTTTG TCCGCATACT TGCAATATAA AAGAGGTTAT ATATGACACT
GCTGCTTTAA TTACACCTAA GGCTCAGCAA AAGAATATAG TACTCAGAAT TATAATCGGC
GATGAAGTGC CAACATATAT CTGCGCCGAT GAACAAAAGC TGCGTCAGAT TTTAATGAAT
TTAGCTTCGA ATGCCATTAA GTTTACACGT TCAGGTTCGG TGTCATTTAA ATTAGTGGTA
AAAGCGGAGG AAGGTGAGAA TATTCGTTTG CTCTTTTCAG TTAAAGATAC TGGAGTCGGT
ATAGATAAGA ATAAGCATGC GAAAATATTC GAGGAGTTTC AACAAGAGGA AAGTAATACT
TCCATTGATT ATGGTGGAAC GGGGTTGGGC CTCTCTATTG CCACCAAAAT GGTAAAAATA
ATGGGGGGCG AAATAATGAT TAGTTCTGAT AAAGGTGTTG GGAGTGAATT TCATTTTATC
TTAGCCTTTC CAAAACAAGA AGAAAGAGTC TGCGAACGAC TCGACTCACA ACATTTGATT
TATTGTGCGA TTAAGCATAG CCCTCTTCTA GTTCAAAATA TTATTGATTC AAATCATCAA
CTCGATAAAA TAACTAAAGT GTCTGAAATC AGGCCGCTAT TAAAGCCTTC AAGTGTAATC
GTGTTAAATG TTGATGATAT TTCCGATAAA CAGGTACTGG TTGATATTGC GAAAGAGTGT
TCATTGACTC CAATTATCAT TGCTAGAGCA AATAATTCGA TTAATACTGA TTTTGGTGAG
CTGGTCGCTG GATACATTAC ATTGCCATTG TTAGGTGAGC GTTTGAATAC CTTAATTAAG
TCTGTATCCC ATTGTCAAAA GCAAGAAGAG GATCTTGTCC CGTTAAACAG TGACTCCCAA
AAGAGTAAGA AAATAGTGCT GGTAGTTGAA GATAATAAAG TGAACCAACA GGTTGTCTCT
ATTAACTTAA AAAAGCTAAA CCTTCCGTAT CTTATCGCCA ATGACGGCAG GGAAGCATTG
GAGAATTATA AACGTCATAT CGGAGGCGTT TCTGTCATTT TAATGGATTG TATGATGCCA
ATCATGGATG GTTTTGAGGC AACGAGAGCA ATTCGTATTT TTGAAAAAGA AGAAGGCGAA
CCGCGAGTTA CAATTATAGC CTTAACTGCA TCAATTTTAG ACGATGATAT TCAAAAGTGT
TTTGAGTCAG GGATGGATGA TTACTTGCCA AAGCCTTTCA AGCGAGATGT ATTGGTCCGC
AAACTTGCGA AGCAGCATTA A
|
|---|
| Protein sequence | MLKQGSWSIK TFLLAGSVAI VILLIVNVSI TQYVSNTKLD LSRLENEVVV SANTLLMIRR
SEKDFISRID PKYTFQVLDF KAKLVQQLTQ IDRLLTQSNL DISYNNQRVL EELDDYIDTF
SMLINEIYSI NGTSAEQGLL ARFEHNSNEL QLLTNQLKDT ELLELIIANQ LTVFDFFKSF
DSRLLTRITH QFKIIEQHII DKPQSTLPLQ QAFLSFEHAF FQLQSSMKRR GYSESLGYHG
TLRQNVHSVE RSLETLFNTI PLKVDKSVSG LVVTQSIVEL LLVLLIIGIL YYIFYAITRM
EKGLIFAREK EQQANSAKSS FLANMSHEIR TPLNGIIGMT EILTDSKLTA IQKDYLATIN
SSSQTLLMLI NDILDLSKIE SGHLEFCPHT CNIKEVIYDT AALITPKAQQ KNIVLRIIIG
DEVPTYICAD EQKLRQILMN LASNAIKFTR SGSVSFKLVV KAEEGENIRL LFSVKDTGVG
IDKNKHAKIF EEFQQEESNT SIDYGGTGLG LSIATKMVKI MGGEIMISSD KGVGSEFHFI
LAFPKQEERV CERLDSQHLI YCAIKHSPLL VQNIIDSNHQ LDKITKVSEI RPLLKPSSVI
VLNVDDISDK QVLVDIAKEC SLTPIIIARA NNSINTDFGE LVAGYITLPL LGERLNTLIK
SVSHCQKQEE DLVPLNSDSQ KSKKIVLVVE DNKVNQQVVS INLKKLNLPY LIANDGREAL
ENYKRHIGGV SVILMDCMMP IMDGFEATRA IRIFEKEEGE PRVTIIALTA SILDDDIQKC
FESGMDDYLP KPFKRDVLVR KLAKQH
|
|---|
| |