| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_2322 |
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| Symbol | prpB |
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| ID | 5662715 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella pealeana ATCC 700345 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009901 |
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| Strand | - |
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| Start bp | 2828831 |
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| End bp | 2829709 |
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| Gene Length | 879 bp |
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| Protein Length | 292 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 641236932 |
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| Product | 2-methylisocitrate lyase |
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| Protein accession | YP_001502177 |
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| Protein GI | 157962143 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG2513] PEP phosphonomutase and related enzymes |
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| TIGRFAM ID | [TIGR02317] methylisocitrate lyase |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.458801 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGAGCGCAG GTAAGAAGTT TCGCGAGGCA TTAGCCGCTA ACAAGCCCCT ACAGATAGTA
GGTACCATCA ATGCTTATTC AGCCATGATG GCAAAAAAGA TTGGTCACCA AGCTATTTAC
CTTTCTGGTG GCGGGGTGGC AAACGCCTCT TATGGTCTGC CGGATCTCGG CATGACATCG
CTTAATGATG TGATTGTCGA TGTGCAGCGT ATTACTTCAG CCTGCGATTT ACCTTTGCTG
GTGGATATCG ACACTGGCTG GGGCGGCGCA TTTAACATTG CTAAAACCAT TCGTGATATG
GAAAAAGCCG GCGCAGCTGC GGTGCACATG GAGGACCAAG TGGCGCAAAA GCGTTGTGGT
CATCGTCCTA ATAAAGAGAT TGTATCAACA CAAGAGATGG TCGATCGCAT CAAGGCCGCG
GTGGATGCCC GCACCGATCC TGACTTTTTC ATCATGGCGC GTACCGACTC TTTCGCCCAG
GAAGGCTTAG AAGCAGCGAT TGCCCGCGCT AAAGCCTATG TGGCCGCAGG CGCTGACGGC
ATTTTTGCAG AAGCGGTTAA AACTGAAGAG CATTACCGCG CATTTGCCGA TGCTCTCGAT
GTACCTATCC TTGCCAATAT TACTGAATTT GGCCAAACCG AACTGTGGAA CAAAGAGCAA
CTAGGCGAAT GGGGCGCCTC TATGGTGCTG TATCCGTTAA GTGCCTTTAG AGCCATGAAC
AAAGCTGCCG AGATGGTGTA CACCTCAATT CTTGAAAATG GCGACCAAAA GGCTGTGGTT
GATTCAATGC AAACTCGCAT GGATCTATAC GATTACTTGG GTTACCACGA TTATGAGCAA
AAGCTAGATA AGCTGTTTTC AGAAGGCAAG AACTTGTAA
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| Protein sequence | MSAGKKFREA LAANKPLQIV GTINAYSAMM AKKIGHQAIY LSGGGVANAS YGLPDLGMTS
LNDVIVDVQR ITSACDLPLL VDIDTGWGGA FNIAKTIRDM EKAGAAAVHM EDQVAQKRCG
HRPNKEIVST QEMVDRIKAA VDARTDPDFF IMARTDSFAQ EGLEAAIARA KAYVAAGADG
IFAEAVKTEE HYRAFADALD VPILANITEF GQTELWNKEQ LGEWGASMVL YPLSAFRAMN
KAAEMVYTSI LENGDQKAVV DSMQTRMDLY DYLGYHDYEQ KLDKLFSEGK NL
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