Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Spea_2211 |
Symbol | |
ID | 5662604 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella pealeana ATCC 700345 |
Kingdom | Bacteria |
Replicon accession | NC_009901 |
Strand | - |
Start bp | 2684377 |
End bp | 2685669 |
Gene Length | 1293 bp |
Protein Length | 430 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 641236814 |
Product | integrase family protein |
Protein accession | YP_001502066 |
Protein GI | 157962032 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG4974] Site-specific recombinase XerD |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.0136042 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCAATTAC CTCCAGTTAT CCCGCTTTTT GATTCAATCG ACTACATTCA AATTGGCAAT CCGCTGGTCA ATCAACATAT CACTCAACTT AGCTTGGGGG ATCTCGATGA AGCCGGTTTA GTGTTTGAAC ACGCTACAGA TTGGCTATTC GAGCAAAAAT ACAATGAAAA CAACTATAAA GCCTATCGAA GCGAACTAAC CACCTTCCTG CACTGGTGTT TTGATGTAAT AAAACTCAAC GTTAGTGCAA TAGGGCGCCG AGAAGTCGGC CTATATATAG AGTATTGTAA AAATCCGCCA ACCGAACTTA TTGGCTATTT TAACGTGGCC CAATTCAAGC AGGACAAGAC GAGCGACGAA CGAACGCCAA ACCCGGCTTG GCTGCCATTT AGAGGTAAGA AAGTCGACGG GCAAATTCAG CCGTATGCTC TCAGCGACAG TGCTCTCAAG ACCAAAGTTG CGATTCTATC TAGCTTCTAT AGCTACCTAA TGGGCGAGGA TTACTGCGAG AAAAATCCAG CGCAGATGTG GCTTAATAAG AGTCGATTCT CATCAAGGCA GAAGTACCGA CTCAACACAG ATGATGATAA CCAGTTGGCG TTTACCGAGC TGCAATGGTC CTACATCATG TCAACGGTTG AGAAGTTAGC CAAAGCACAG CCAGAACTTC ATCAACGCAG TCTGTTTCTA ATCAAGCTTA TCTACTCCTG CTATCTGCGG GTATCAGAAG TTTCAGCAAG GGCTGGTTTC TCACCGGTGA TGAGTCAGTT TAAACAAAAC CGCCAGACCG GAATTTGGAG CTTTTATATT CCAAAGAGTA AAGGCGGCAA GAGCAGAAGC GTTGCCGTAT CTAAGGCATT AATCGATGCG TTAACGCAAT ATCGTAGCTA CTTAAAACTG TCGCCACTAC CAACAAGCAA CGAGCAACAT CCGCTAATCG TGCGCCAAAA AGCGGCGGGG CGAGGGCGCG AAGTCGGCAA CTTAAATGCC AACCTGGGGA TCCGACAAAT TCGAGAAGAA GTGGATAAGA TCATCGTAAT TGCGGCGAAT AGCATCGAAA CTGACGGCTT TTGTGAGGAT GCACTACAAA TGCGCGGCTT AAGTATTCAC AATATTCGCC ACACAGGGAT CACCCACGAC ATCAATATTA ACGGTCGACC ATTGTCACAC GTACAGGCCG ATGCGGGTCA TGAGAGTATC GACACCACAT CGCAATATCT GCACACTACA CAGATAGAGC GTCATGAGAG TGCGCAGAAT AAACCGTTAG ATTATCTGCA GGGAATTGAG TAA
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Protein sequence | MQLPPVIPLF DSIDYIQIGN PLVNQHITQL SLGDLDEAGL VFEHATDWLF EQKYNENNYK AYRSELTTFL HWCFDVIKLN VSAIGRREVG LYIEYCKNPP TELIGYFNVA QFKQDKTSDE RTPNPAWLPF RGKKVDGQIQ PYALSDSALK TKVAILSSFY SYLMGEDYCE KNPAQMWLNK SRFSSRQKYR LNTDDDNQLA FTELQWSYIM STVEKLAKAQ PELHQRSLFL IKLIYSCYLR VSEVSARAGF SPVMSQFKQN RQTGIWSFYI PKSKGGKSRS VAVSKALIDA LTQYRSYLKL SPLPTSNEQH PLIVRQKAAG RGREVGNLNA NLGIRQIREE VDKIIVIAAN SIETDGFCED ALQMRGLSIH NIRHTGITHD ININGRPLSH VQADAGHESI DTTSQYLHTT QIERHESAQN KPLDYLQGIE
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