| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_2093 |
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| Symbol | |
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| ID | 5662486 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella pealeana ATCC 700345 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009901 |
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| Strand | + |
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| Start bp | 2534506 |
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| End bp | 2535288 |
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| Gene Length | 783 bp |
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| Protein Length | 260 aa |
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| Translation table | 11 |
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| GC content | 40% |
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| IMG OID | 641236688 |
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| Product | pseudouridine synthase |
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| Protein accession | YP_001501948 |
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| Protein GI | 157961914 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
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| TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.000796384 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGTATCATA AGCCGTCTTT TAACTCTATC GAGTCAATCT CATTGCAACT TATTCCTACA
GCAGCTGACA ATTTTATTGC GCCTCCTTGT TTTGAGGAGA TCACTATTCT GTTTCAAGAT
GAGCACCTGT TATTAATCAA TAAGCCCTCT GGTTTACTGT CTTTATCAGG TAAGAATCCA
GCGAACCTTG ACTCTGTTCA CTATCGATTA GTTAAAGATT TTCCCGATTG CACCTTAGTG
CATAGATTAG ATTTGGGCAC TTCGGGCATT ATGGTGATAG CACGAAACAA GACGGTTAAT
GCGCTTTTGT GTAGGCAATT TAGTGAACGC TCGGTATTAA AAGCTTATAC AGCATTGCTG
CTTGGCGAGA TTAAAAATGA AGATGGATTT ATTGATGCGC CAATTGCGAA GGACAAGCCA
AACTTTCCAT TAATGAAAAT TTGTGACAAA GAGGGTAAAC AGGCTCGCTC TTTGTATAGA
GTTTTAGCTA AAGAATCTTG TGCAAGCCTC GATGAAAAAA CTCAGTTACT TAATAACAAA
CGTGAACATA TAGCTGATTC AGTTGCTGTT ACTAGAGTTG AGTTTATTCC TGAAACCGGT
CGAACTCATC AATTACGGAT CCATAGCCAG TACTTTGGTC ACCCAATTAT CGGCTGTGAT
CTTTACGGCT CCGACTTTTC TTATCGACTG GCATCAAGGT TGATGCTGCA TGCAACACGG
CTTGAATTTG ATCACCCCAT CACAGGGGAA AGGATAGTGG CAAATAGTCC GTGTCCATTT
TAG
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| Protein sequence | MYHKPSFNSI ESISLQLIPT AADNFIAPPC FEEITILFQD EHLLLINKPS GLLSLSGKNP
ANLDSVHYRL VKDFPDCTLV HRLDLGTSGI MVIARNKTVN ALLCRQFSER SVLKAYTALL
LGEIKNEDGF IDAPIAKDKP NFPLMKICDK EGKQARSLYR VLAKESCASL DEKTQLLNNK
REHIADSVAV TRVEFIPETG RTHQLRIHSQ YFGHPIIGCD LYGSDFSYRL ASRLMLHATR
LEFDHPITGE RIVANSPCPF
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