Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Spea_2078 |
Symbol | |
ID | 5662471 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella pealeana ATCC 700345 |
Kingdom | Bacteria |
Replicon accession | NC_009901 |
Strand | + |
Start bp | 2517614 |
End bp | 2518420 |
Gene Length | 807 bp |
Protein Length | 268 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 641236673 |
Product | short chain dehydrogenase |
Protein accession | YP_001501933 |
Protein GI | 157961899 |
COG category | [I] Lipid transport and metabolism [Q] Secondary metabolites biosynthesis, transport and catabolism [R] General function prediction only |
COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 0.237078 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTTTAGCT ATCAAGGAAA GAATGTTGTC GTTGTAGGTG GTACTAGCGG GATTAATCTT GCTATTGCCG TTCACTTCTC TCAAGCCGGA GCGAATGTTG CTGTGGCGAG CCGCTCCGTC GAAAAAGTAG ATGCCGCTGT AGAGTTATTA AAACAAGCAA ACCCTAATGG AGAACACTTA GGTGTTTGCT TTGATGTCAG GGATCTTGAG GCCTTATCAA AGGGCTTTGC TACTATTAGT GATGCCTTCT CAACTATCGA TGTTTTAGTG AGTGGCGCCG CCGGTAATTT TCCGTCAACT GCTGAAAAGC TTTCCGAAAA TGGTTTTAAG TCGGTAATGG ATATCGATCT CTTAGGCAGT TTTCAGGTGC TTAAGCAGGC TTATCCATTA ATGAGTGACA CTGGTGGAGC GATTATACAG ATCTCTGCAC CACAGGCGTT TGTACCTATG CCTATGCAAG TTCATGTGTG CGCTGCTAAA GCGGGCGTTG ATATGTTAAC TAAAACATTA GCAATAGAAT GGGGACGCAA AGGGATCAGG ATAAATTCAA TTGTCCCAGG TCCTATAGCG GGAACCGAAG GCTTTAATCG GTTAGCCCCA TCAGAAGAGC TGCAGGCTCA CGTTGCGCAA GGCGTTCCAT TAAAACGTAA TGGGCGTTGT GAAGACATTG CCAACGCGGC CCTATTTCTC GCTTCAGATA TGGCCTCGTA TATCACAGGC ACTGTGTTGC CAGTTGATGG TGGTTGGTCA TTAGGTGGGG CTGGTTCTGC AATCGCCGAG ATCGGCCAAT TAGCTAGACG CAACTAA
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Protein sequence | MFSYQGKNVV VVGGTSGINL AIAVHFSQAG ANVAVASRSV EKVDAAVELL KQANPNGEHL GVCFDVRDLE ALSKGFATIS DAFSTIDVLV SGAAGNFPST AEKLSENGFK SVMDIDLLGS FQVLKQAYPL MSDTGGAIIQ ISAPQAFVPM PMQVHVCAAK AGVDMLTKTL AIEWGRKGIR INSIVPGPIA GTEGFNRLAP SEELQAHVAQ GVPLKRNGRC EDIANAALFL ASDMASYITG TVLPVDGGWS LGGAGSAIAE IGQLARRN
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