| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_1815 |
|---|
| Symbol | |
|---|
| ID | 5662210 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella pealeana ATCC 700345 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009901 |
|---|
| Strand | + |
|---|
| Start bp | 2218439 |
|---|
| End bp | 2219581 |
|---|
| Gene Length | 1143 bp |
|---|
| Protein Length | 380 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 39% |
|---|
| IMG OID | 641236405 |
|---|
| Product | TPR repeat-containing protein |
|---|
| Protein accession | YP_001501673 |
|---|
| Protein GI | 157961639 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG4783] Putative Zn-dependent protease, contains TPR repeats |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCGGTTAA TCATTATCTG TTTGCTCACC ATAATGCTCC AAGGCTGCCA AAGTCGAGCC
TCAACACAAG GGCCAACATT GCCACGAATT GACTATCAAG TTAACGCTGC AAAATACTCC
ATTCCAACAC CTGAAGACTT TTATCAATTA ACTGATGCGC AAGTGAAGTC AATAAGATCT
TTTATTGAAC AAGAAAAATT TGCCGAACTT AGCCCCCATA GAAAGGTTTA TGCGTTATTA
GAATCAAAGT TAGATAATTT TGATTTTCGT GGTGAAAATT TATATGCCAG TGATTCTCTT
GACAGTAATA GCGGCAATTG CATGGCATTA GCTATGCTGA CTTATGCGAT AGCTAAGGAG
CTAGATGTTG AGATTAGTTT TCAGGTTATG CATACCATTC CTGTGTTACT TGGAGTGTCA
GGCAATATTT CGGTAACTTC AGACCATGTG CGTAGTTTTC TTCATGAACA AGGCCAAGAT
AAAGATAGTT TTTTAGGACA AACTAACCGG ATCCGCATCG ATTATTTTCC AGATAAATAT
GATCGGGGCG GAATGATGAT CGATAGTGAT GAGTTTTTTG CGATGTTTTA TCGTAACCTA
GCTGCAGATG CCATTTTGGA CAAGCAATTA GAGTTGGCTT ATTTACTACT AAATGAAGCG
CTTAAATTTA ATGATCAATA TGGGCCCGCG ATCAATATGC AGGCGGTTGT ATTACGTCAG
CTTGGTGAGC TGGACTCGGC GGAGCAACTG TATCTATATG GCCTTGTTGT GGCGGATGAG
AAAATTGATC TACTGAGTAA TTATCATTTT TTATTAGTGC ATAGTGAGCG TTATCAAGAA
GCAGAAAAAA TTAAAGCTCA GTTACTCGCA TTCGATCATC ACAGCCCTTA TAAATGGTAC
TTTCAAGCCC GAGATGCCAT GCTTGCTAAA GATTACTCAA GCGCCAAAAC TTATCTAAAC
AAGTTTCTGA AAAATACTCA TTATTACCAT AAAGCTTATT TTGATCTTGC TCGGGTGGAA
TATCAGCTAG GCGACACTTT TGCTGCAAAA AAATCCCTTA ATAAAGCATT AGCGCTGAGT
GCAGAAGCAA AAGATAACGA CTTGTATCAA GCAAAGTTAA ATTGGCTATC TAAAACAGAC
TGA
|
|---|
| Protein sequence | MRLIIICLLT IMLQGCQSRA STQGPTLPRI DYQVNAAKYS IPTPEDFYQL TDAQVKSIRS
FIEQEKFAEL SPHRKVYALL ESKLDNFDFR GENLYASDSL DSNSGNCMAL AMLTYAIAKE
LDVEISFQVM HTIPVLLGVS GNISVTSDHV RSFLHEQGQD KDSFLGQTNR IRIDYFPDKY
DRGGMMIDSD EFFAMFYRNL AADAILDKQL ELAYLLLNEA LKFNDQYGPA INMQAVVLRQ
LGELDSAEQL YLYGLVVADE KIDLLSNYHF LLVHSERYQE AEKIKAQLLA FDHHSPYKWY
FQARDAMLAK DYSSAKTYLN KFLKNTHYYH KAYFDLARVE YQLGDTFAAK KSLNKALALS
AEAKDNDLYQ AKLNWLSKTD
|
|---|
| |