| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_1770 |
|---|
| Symbol | |
|---|
| ID | 5662165 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella pealeana ATCC 700345 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009901 |
|---|
| Strand | + |
|---|
| Start bp | 2152187 |
|---|
| End bp | 2154010 |
|---|
| Gene Length | 1824 bp |
|---|
| Protein Length | 607 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 641236360 |
|---|
| Product | lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA |
|---|
| Protein accession | YP_001501628 |
|---|
| Protein GI | 157961594 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1132] ABC-type multidrug transport system, ATPase and permease components |
|---|
| TIGRFAM ID | [TIGR02203] lipid A export permease/ATP-binding protein MsbA |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.0549134 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACAACAT CTCCTAAAAA TGAAGTCTGG ACTGTATTTA AGCGTCTGCT GGGCTATTTA
AAGCCTCTTA AAGCAGTATT AGCTTTTGCC ATCATTGGTC TAATGATGTA CGCCCTTGTC
GATGCCACTT TTATCGCGGT GATCAAACCA TTTATCGATG AGGGATTTGG CGGCCAGGCT
GGTCAAGCAG CGCAAGCTGC TGGCGGTATT ACAAGTGTTG ATTTTGGCAC CAGCGGCGGA
TTTAACTCAA GCAATGATGT ATTGTTAATG GCGCCGTTTG TGGTAATCGC CTTATTCTCG
CTACGCGGTC TAGCAAACTT CCTATCGACC TACTGTATCT CTTACATGAG TGCGCGGGTG
ATTATGGATA TGCGCCAAGA AGTGTTCGAA CATTACTTGA CCCTACCCGT CAGCTATATG
GACCAAGAAA ATACCGGTAA TTTGATCTCA CGTGTCACTT ACGACACTGA ACAGATTGCC
CGTGCATCGG GTAGTGCACT TATCACCATA GTACGTGACA GTATTACTGT GATCGGCATG
ATCGCCATCA TGTTCTACTT CTCATGGAAA TTATCATTAG TTATCTTAGT TATCGGCCCA
ATCATCGGGC TGGTTATCGC AGTAGTTAGT CGTCGTTTCA GAAAGGTCTC TAAACAAATT
CAAACTGCTA TGGGTGGGGT CACTGCAGCC ACTGAACAGA TGATTAAGGG CCATAAGAAT
GTGCTGTCTT TTGGTGGCCA AGAAACAGAG GCAAAACGCT TTGCTAAAGT AAACGACCAA
AATCGTTATC AAACTATGAA GCTGGCAACG GCTCAGGCTA TCAGTCAGCC ATTGGTGATG
ATTATCGGCT CGTTTGCGTT GGCATTTGTA CTTTATGCCG CCAGCATTGA TAGTATGAAG
GCCGAGCTAA CAGCGGGTAC GTTTGCTACC ATCCTAGGTG CGATGCTTGC CATGTTACAG
CCGATTAAAA ACTTAACCCG TGTTAATGCT GAGTTCCAGC GCGGTATCGC CGCCTGTACA
ACGGTTTTTG AGCTGTTAGA CACCAAGCCT GAAAGTGACA CGGGTACTCT AGATGTAGAG
CGTGTTAAGG GGGAGCTTGC CTTCAATCAC GTGAACTTTA GCTACCCTGG TCATGAGAAG
TTGGCGCTTA ACGATATTGA CTTTAAAGTT GAGCAAGGCC AAACCTTAGC CTTAGTCGGT
CGTTCAGGAT CTGGGAAATC AACGATTGCG AGCCTAGTTA CTCGTTTCTA TACTGGCCTT
AAAGCGGGCG ATATCACCCT AGATGGGCAA AACATCGATG ACTATAAGCT TAAAACCTTA
CGAAGTCAGG TTGCGTTAGT CTCACAGCAA GTGACACTGT TTAATGACAG CATCGCCAAT
AATATCGCCT ATGCGTATCC CGGTGTTGCG ACTCGTGAAC AGATCATCGA AGCGGCAACC
TTAGCCCATG CGATGGAGTT TATCGAGCCA ATGGAGTTGG GATTAGATAC CCAAATTGGT
GAGAATGGCG TAATGCTTTC TGGCGGTCAA AGGCAACGTA TCGCGATTGC ACGTGCGATA
TTGCGTAATG CGCCAGTGTT AATTCTTGAT GAGGCCACAT CCGCGCTCGA TACCGAGTCT
GAGAAGGCTA TTCAACAGGG ACTTGATAAT CTACGTCAAA ACAGAACTTC AATCGTGATT
GCACATCGCT TATCGACCAT TGAAAGTGCC GATCAAATTT TAGTGGTTGA TCAAGGTAAG
ATTGTCGAGC GTGGCACCCA TGAGTCGCTG CTTGCCAAAG GCGGCGTTTA CGCTAACCTG
TATCAGATGC AGTTTGGTAG CTAG
|
|---|
| Protein sequence | MTTSPKNEVW TVFKRLLGYL KPLKAVLAFA IIGLMMYALV DATFIAVIKP FIDEGFGGQA
GQAAQAAGGI TSVDFGTSGG FNSSNDVLLM APFVVIALFS LRGLANFLST YCISYMSARV
IMDMRQEVFE HYLTLPVSYM DQENTGNLIS RVTYDTEQIA RASGSALITI VRDSITVIGM
IAIMFYFSWK LSLVILVIGP IIGLVIAVVS RRFRKVSKQI QTAMGGVTAA TEQMIKGHKN
VLSFGGQETE AKRFAKVNDQ NRYQTMKLAT AQAISQPLVM IIGSFALAFV LYAASIDSMK
AELTAGTFAT ILGAMLAMLQ PIKNLTRVNA EFQRGIAACT TVFELLDTKP ESDTGTLDVE
RVKGELAFNH VNFSYPGHEK LALNDIDFKV EQGQTLALVG RSGSGKSTIA SLVTRFYTGL
KAGDITLDGQ NIDDYKLKTL RSQVALVSQQ VTLFNDSIAN NIAYAYPGVA TREQIIEAAT
LAHAMEFIEP MELGLDTQIG ENGVMLSGGQ RQRIAIARAI LRNAPVLILD EATSALDTES
EKAIQQGLDN LRQNRTSIVI AHRLSTIESA DQILVVDQGK IVERGTHESL LAKGGVYANL
YQMQFGS
|
|---|
| |