| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_1562 |
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| Symbol | |
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| ID | 5661959 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella pealeana ATCC 700345 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009901 |
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| Strand | + |
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| Start bp | 1895838 |
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| End bp | 1897193 |
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| Gene Length | 1356 bp |
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| Protein Length | 451 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 641236150 |
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| Product | RND family efflux transporter MFP subunit |
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| Protein accession | YP_001501422 |
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| Protein GI | 157961388 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1566] Multidrug resistance efflux pump |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 28 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCGGCAT TTAAGGGGAA GCGATGGTAT TTCTTTCCTG CGGTCGCCGT GGGTTTTGTG
GTGTTGGTGT TAGTGGTCAA GTTGCGTAGC CACCCACCAT TAGAGTTGCA GGCAGAGCCG
AGTAAGTTGG TCGAGGTGAT CTCTCTAGAG AAAAGCCCTG TGGTGGTACA AGTCGATGCC
TTTGGCCGTG TAAGTCCTAA AATTCAATGG CAGTTACTGC CTGAAGTCGG TGGCCGCGTG
GTGTACAAGC ACCCAGATCT TGCCGTGGGG AAAATCCTTG CCAAAGATAC CTTACTGCTG
GCTATCGATC CGCTGGATTA TCAAATTCGT CTGGCTCAAG CTCAGGCTGA TCGTAAGGCC
CTAGAGGGTC AGATAGAAGG TAAGAAGCTA CAACTTGAAA ACCTTAAGTT ATCGCTTGAG
ATTGAAAATA ATCGCTATGA CTTAGTCAAA TCTGACTTAA AGCGTAAAGA GACACTGCGT
AAGCAAAATC TTATCTCTCA GTCTGAACTC GATGGCGAGC GGCAGAACCT ACTGGCTCAG
CAGCAAAAGC TACAAGAGTT AGATAATAGT CTGAACTTGA TGCCAAACGA GACGCAAATT
CTTCAAGCTC AACTGCTGCA AGCGATTGCT CGTGAGCAGG AAGCACAGAG TCAGTTAACC
AAGACGGAGA TTCGCCTGCC ATTTGAAGGC CGTGTGGCCG AGGTCAATGT TGAAGGTAGT
CAGGTGGTAT CGCCGCAGCA GGTGCTTGCA CGCATCAATG GCATCGAGGT GATGGAGGTC
GAGGCGCAGG TGTCGCTAGG TGATGTGATG ACACTGATGA AAACAGTTAA CAGGCCACAA
GGGCAAGATA AGCAATTACC CCGAGCTGAA GCCTTGGGCT TAACCGCCGA GATCACCCTA
AAAGGTGCGA CTTACTCCTT TAGTTGGCCG GCTGAAATTA CCCGTATAGG TGAAACGGTC
GATCCTACCT TGGCCACGGT AAATATTGTG CTACAGGTAG AGCAGCAGTA CCGCGAGCTT
AAAATTGGTC AGTCACCACC ATTGGTGAAT GGCATGTTTG TTAGTGCCCG AATTAAAGGC
GGCGAGCGTG ACTACTGGAT GGTACCCGAG CGAGCACTAC ACGGTGAAAA ACTCTATATC
AAGGATCAAG ACAATCGCCT CGAACTTGTG GATGTTCAGG TGCTGTTCCG TCAAGAGGGG
CAAGCGGCGG TGCAGGGCAA TCTCGTTGAG GGCATGCAGT TAGTATTAAC TGACCTTATT
CCAGCGGTTA ACGGCATGGC GCTACGCATT CGAGCAGATG ACGCGACAGG AGCTGACCTG
AGTACTGAAC AAGCGGCTGG GGAGATGCTG CCGTGA
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| Protein sequence | MSAFKGKRWY FFPAVAVGFV VLVLVVKLRS HPPLELQAEP SKLVEVISLE KSPVVVQVDA
FGRVSPKIQW QLLPEVGGRV VYKHPDLAVG KILAKDTLLL AIDPLDYQIR LAQAQADRKA
LEGQIEGKKL QLENLKLSLE IENNRYDLVK SDLKRKETLR KQNLISQSEL DGERQNLLAQ
QQKLQELDNS LNLMPNETQI LQAQLLQAIA REQEAQSQLT KTEIRLPFEG RVAEVNVEGS
QVVSPQQVLA RINGIEVMEV EAQVSLGDVM TLMKTVNRPQ GQDKQLPRAE ALGLTAEITL
KGATYSFSWP AEITRIGETV DPTLATVNIV LQVEQQYREL KIGQSPPLVN GMFVSARIKG
GERDYWMVPE RALHGEKLYI KDQDNRLELV DVQVLFRQEG QAAVQGNLVE GMQLVLTDLI
PAVNGMALRI RADDATGADL STEQAAGEML P
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