Gene Spea_1196 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSpea_1196 
SymbolalaS 
ID5661595 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella pealeana ATCC 700345 
KingdomBacteria 
Replicon accessionNC_009901 
Strand
Start bp1452516 
End bp1455143 
Gene Length2628 bp 
Protein Length875 aa 
Translation table11 
GC content46% 
IMG OID641235748 
Productalanyl-tRNA synthetase 
Protein accessionYP_001501058 
Protein GI157961024 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0013] Alanyl-tRNA synthetase 
TIGRFAM ID[TIGR00344] alanine--tRNA ligase 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00838926 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTATCAAA CCACTGCAGC ACTGCGAAGT GCTTTTTTGG AATATTTCCG CACAAATGGT 
CACCAGGTAG TAGATAGCAG CTCTCTCGTT CCAGCGAACG ATCCAACGCT ACTATTTACT
AATGCGGGTA TGAACCAGTT TAAAGATGTG TTTTTGGGTG CAGATAAACG TAGCTATTCT
CGTGCAACGT CTTCACAGCG CTGTGTTCGC GCGGGTGGTA AGCACAACGA CTTAGATAAC
GTGGGCTACA CAGCACGTCA CCACACTTTC TTTGAAATGT TAGGTAACTT TAGCTTTGGT
GATTATTTTA AAGAAGAAGC AATTCATTTC GCATGGACTT TCCTGACCGA AGAGTTGAAG
CTACCGAAAG AACGCCTTTG TGTCACCATC TATGACACAG ACGACGAAGC ATTTGAAATT
TGGAATAAGA AAATTGGCGT AGCGGCGGAA AATATTATCC GTATTGGCGA CAATAAAGGT
GCTGCATATG CGTCAGATAA CTTCTGGCAA ATGGGTGACA CAGGTCCTTG TGGCCCATGT
TCTGAAATCT TCTATGATCA CGGTGATCAT ATCTGGGGCG GACGTCCTGG TACACCAGAA
GAAGATGGCG ACCGTTTCAT CGAGATCTGG AACATCGTAT TTATGCAGTA TAACCGTCAA
GCTGACGGTG AGATGAAGCC ACTACCAAAG CCATCTGTTG ATACCGGTAT GGGTATTGAG
CGTATTGCTG CCATTATGCA GGGCGTACAT TCAAACTACG AAATTGATAT TTTCCAAGCT
TTGATCAAGA AGGCTGCAGC TATTCTTGGT GTAACGGATC TTGAGAACAA GTCATTACGT
GTTATTGCCG ATCACATTCG TTCATGTGCC TTCTTAATTG CCGACGGTGT TATGCCATCA
AATGAAGGCC GTGGTTATGT GCTTCGTCGT ATAATTCGTC GTGCCGTTCG TCATGGTAAC
AAGCTAGGTG CTACTGAAAG TTTCTTCTAC AAGCTGGTTC CAACATTAAT TGAAGTGATG
GGCGCCGATG CTGCAAAAGG CTTGCAAGAG ACTCAAGCTA TTGTTGAAAA GTCACTAAAA
GCTGAAGAAG AACAATTCGC ACGTACACTT GAACGTGGTC TAGGCATTTT AGATGCGGCG
CTAAATGAGC TAGCAACTAA TGTGTTAGAT GGCGAAACAG CATTCAAGCT TTACGATACT
TATGGCTTCC CAGTAGATTT AACTGCTGAC GTTTGTCGTG AGCGTGATAT CACGGTTGAT
GAAGCAGGAT TTGAAGTTGC TATGGCAGCG CAGCGTAGCC GTGCACAAGC AGCTGGTCAA
TTCGAGACTG ACTATAACGA AGGTCTTATA ATTGATGAAC AAAGCGGCTT TACTGGTTAC
ACCGATCTAA ATAATCAAGC GACAGTGACA GCAATCTTTA AAGCGGGTGA GTCAGTTGAT
AGCATTGTTG CTGGTGATGA CGTGGTTATC GTACTCGATA ACACACCGTT TTATGGTGAG
TCAGGTGGTC AATGTGGCGA TGAAGGTGTA TTGATTGCCG ATGGAATCGA GTTCACTGTG
ACTGATACAC AAAAGTATGG TCAAGCGATT GGTCATATCG GTCGCGTAGC GACTGGTACA
GTTAAAGTTG GCCAAGTGGT TACAGCGAAT GTTGATAAGA AGCTTCGTCA TAGAACCGAG
CTAAACCATT CAGTGACACA CCTTTTACAT GCAGCGCTTC GCCAAGTGTT AGGTACACAC
GTATCTCAGA AAGGTTCTTT GGTTGACCCA GAGCGTCTAC GTTTCGACTT CTCTCATTTC
GAAGGTGTTA AAGCTCACGA GCTTAAAGAA GTTGAAGAGC TAGTGAATAC CCAAATTCGT
CGTAACCACG AATTGACCGC TGAAGTGATG GATATAGAAA CGGCCAAAGA AAAAGGTGCT
ATGGCACTGT TTGGTGAGAA GTATGATTCA GAAGTGCGTG TTGTGACTAT GGGCGACTTC
TCTATCGAGC TTTGTGGGGG TACTCACGTT GGGCGTACTG GTGATATCGG TTTGTTCAAG
ATCACTTCAG AGGGCGGTAT CGCTGCCGGC ATACGTCGTA TTGAAGCGGT AACAGGCGCA
GCTGCGATGG CTTATGTTGC TAAGCAGCAA GCACAACTTG AAGAAGCGGC TGCATTACTG
AAGGGCGATA GTGCTTCTGT GGTTGCTAAG CTTAAAGCAC AGCTTGATAA GACTAAGTTA
CTTGAAAAAG AGCTATCTCA ACTAAAAGAC AAGTTGGCAG CTGCGACTAG CGCCGATCTT
GCTGGCGAAG CTGTTGACGT GAATGGCGTT AAGGTTCTCG TTAAGAAACT TGAGGGTGTT
GATGCTGGGG CTCTTCGTGG TCTACAGGAT GAGCTCAAGC AAAAGCTGCA GTCAGGTATC
GTAGTGCTAG CGATTGCCGG CGAAGATAAA GTTAATATGA TCGTTGGTGT GACTAAAGAT
CTTACTGGTA AGGTTAAAGC GGGTGAGCTT GTAGCCTCTA TAGCAGTACA AGTTGGCGGT
AAAGGCGGTG GACGTCCTGA TATGGCTCAA GCCGGTGGTA GCCAGCCTGA GAACCTAGAC
GCTGCTTTAG AGCAAGTTAT TCCATGGATC TCTGCTAAGC TTGCATAA
 
Protein sequence
MYQTTAALRS AFLEYFRTNG HQVVDSSSLV PANDPTLLFT NAGMNQFKDV FLGADKRSYS 
RATSSQRCVR AGGKHNDLDN VGYTARHHTF FEMLGNFSFG DYFKEEAIHF AWTFLTEELK
LPKERLCVTI YDTDDEAFEI WNKKIGVAAE NIIRIGDNKG AAYASDNFWQ MGDTGPCGPC
SEIFYDHGDH IWGGRPGTPE EDGDRFIEIW NIVFMQYNRQ ADGEMKPLPK PSVDTGMGIE
RIAAIMQGVH SNYEIDIFQA LIKKAAAILG VTDLENKSLR VIADHIRSCA FLIADGVMPS
NEGRGYVLRR IIRRAVRHGN KLGATESFFY KLVPTLIEVM GADAAKGLQE TQAIVEKSLK
AEEEQFARTL ERGLGILDAA LNELATNVLD GETAFKLYDT YGFPVDLTAD VCRERDITVD
EAGFEVAMAA QRSRAQAAGQ FETDYNEGLI IDEQSGFTGY TDLNNQATVT AIFKAGESVD
SIVAGDDVVI VLDNTPFYGE SGGQCGDEGV LIADGIEFTV TDTQKYGQAI GHIGRVATGT
VKVGQVVTAN VDKKLRHRTE LNHSVTHLLH AALRQVLGTH VSQKGSLVDP ERLRFDFSHF
EGVKAHELKE VEELVNTQIR RNHELTAEVM DIETAKEKGA MALFGEKYDS EVRVVTMGDF
SIELCGGTHV GRTGDIGLFK ITSEGGIAAG IRRIEAVTGA AAMAYVAKQQ AQLEEAAALL
KGDSASVVAK LKAQLDKTKL LEKELSQLKD KLAAATSADL AGEAVDVNGV KVLVKKLEGV
DAGALRGLQD ELKQKLQSGI VVLAIAGEDK VNMIVGVTKD LTGKVKAGEL VASIAVQVGG
KGGGRPDMAQ AGGSQPENLD AALEQVIPWI SAKLA