Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Spea_1196 |
Symbol | alaS |
ID | 5661595 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella pealeana ATCC 700345 |
Kingdom | Bacteria |
Replicon accession | NC_009901 |
Strand | + |
Start bp | 1452516 |
End bp | 1455143 |
Gene Length | 2628 bp |
Protein Length | 875 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 641235748 |
Product | alanyl-tRNA synthetase |
Protein accession | YP_001501058 |
Protein GI | 157961024 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0013] Alanyl-tRNA synthetase |
TIGRFAM ID | [TIGR00344] alanine--tRNA ligase |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.00838926 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGTATCAAA CCACTGCAGC ACTGCGAAGT GCTTTTTTGG AATATTTCCG CACAAATGGT CACCAGGTAG TAGATAGCAG CTCTCTCGTT CCAGCGAACG ATCCAACGCT ACTATTTACT AATGCGGGTA TGAACCAGTT TAAAGATGTG TTTTTGGGTG CAGATAAACG TAGCTATTCT CGTGCAACGT CTTCACAGCG CTGTGTTCGC GCGGGTGGTA AGCACAACGA CTTAGATAAC GTGGGCTACA CAGCACGTCA CCACACTTTC TTTGAAATGT TAGGTAACTT TAGCTTTGGT GATTATTTTA AAGAAGAAGC AATTCATTTC GCATGGACTT TCCTGACCGA AGAGTTGAAG CTACCGAAAG AACGCCTTTG TGTCACCATC TATGACACAG ACGACGAAGC ATTTGAAATT TGGAATAAGA AAATTGGCGT AGCGGCGGAA AATATTATCC GTATTGGCGA CAATAAAGGT GCTGCATATG CGTCAGATAA CTTCTGGCAA ATGGGTGACA CAGGTCCTTG TGGCCCATGT TCTGAAATCT TCTATGATCA CGGTGATCAT ATCTGGGGCG GACGTCCTGG TACACCAGAA GAAGATGGCG ACCGTTTCAT CGAGATCTGG AACATCGTAT TTATGCAGTA TAACCGTCAA GCTGACGGTG AGATGAAGCC ACTACCAAAG CCATCTGTTG ATACCGGTAT GGGTATTGAG CGTATTGCTG CCATTATGCA GGGCGTACAT TCAAACTACG AAATTGATAT TTTCCAAGCT TTGATCAAGA AGGCTGCAGC TATTCTTGGT GTAACGGATC TTGAGAACAA GTCATTACGT GTTATTGCCG ATCACATTCG TTCATGTGCC TTCTTAATTG CCGACGGTGT TATGCCATCA AATGAAGGCC GTGGTTATGT GCTTCGTCGT ATAATTCGTC GTGCCGTTCG TCATGGTAAC AAGCTAGGTG CTACTGAAAG TTTCTTCTAC AAGCTGGTTC CAACATTAAT TGAAGTGATG GGCGCCGATG CTGCAAAAGG CTTGCAAGAG ACTCAAGCTA TTGTTGAAAA GTCACTAAAA GCTGAAGAAG AACAATTCGC ACGTACACTT GAACGTGGTC TAGGCATTTT AGATGCGGCG CTAAATGAGC TAGCAACTAA TGTGTTAGAT GGCGAAACAG CATTCAAGCT TTACGATACT TATGGCTTCC CAGTAGATTT AACTGCTGAC GTTTGTCGTG AGCGTGATAT CACGGTTGAT GAAGCAGGAT TTGAAGTTGC TATGGCAGCG CAGCGTAGCC GTGCACAAGC AGCTGGTCAA TTCGAGACTG ACTATAACGA AGGTCTTATA ATTGATGAAC AAAGCGGCTT TACTGGTTAC ACCGATCTAA ATAATCAAGC GACAGTGACA GCAATCTTTA AAGCGGGTGA GTCAGTTGAT AGCATTGTTG CTGGTGATGA CGTGGTTATC GTACTCGATA ACACACCGTT TTATGGTGAG TCAGGTGGTC AATGTGGCGA TGAAGGTGTA TTGATTGCCG ATGGAATCGA GTTCACTGTG ACTGATACAC AAAAGTATGG TCAAGCGATT GGTCATATCG GTCGCGTAGC GACTGGTACA GTTAAAGTTG GCCAAGTGGT TACAGCGAAT GTTGATAAGA AGCTTCGTCA TAGAACCGAG CTAAACCATT CAGTGACACA CCTTTTACAT GCAGCGCTTC GCCAAGTGTT AGGTACACAC GTATCTCAGA AAGGTTCTTT GGTTGACCCA GAGCGTCTAC GTTTCGACTT CTCTCATTTC GAAGGTGTTA AAGCTCACGA GCTTAAAGAA GTTGAAGAGC TAGTGAATAC CCAAATTCGT CGTAACCACG AATTGACCGC TGAAGTGATG GATATAGAAA CGGCCAAAGA AAAAGGTGCT ATGGCACTGT TTGGTGAGAA GTATGATTCA GAAGTGCGTG TTGTGACTAT GGGCGACTTC TCTATCGAGC TTTGTGGGGG TACTCACGTT GGGCGTACTG GTGATATCGG TTTGTTCAAG ATCACTTCAG AGGGCGGTAT CGCTGCCGGC ATACGTCGTA TTGAAGCGGT AACAGGCGCA GCTGCGATGG CTTATGTTGC TAAGCAGCAA GCACAACTTG AAGAAGCGGC TGCATTACTG AAGGGCGATA GTGCTTCTGT GGTTGCTAAG CTTAAAGCAC AGCTTGATAA GACTAAGTTA CTTGAAAAAG AGCTATCTCA ACTAAAAGAC AAGTTGGCAG CTGCGACTAG CGCCGATCTT GCTGGCGAAG CTGTTGACGT GAATGGCGTT AAGGTTCTCG TTAAGAAACT TGAGGGTGTT GATGCTGGGG CTCTTCGTGG TCTACAGGAT GAGCTCAAGC AAAAGCTGCA GTCAGGTATC GTAGTGCTAG CGATTGCCGG CGAAGATAAA GTTAATATGA TCGTTGGTGT GACTAAAGAT CTTACTGGTA AGGTTAAAGC GGGTGAGCTT GTAGCCTCTA TAGCAGTACA AGTTGGCGGT AAAGGCGGTG GACGTCCTGA TATGGCTCAA GCCGGTGGTA GCCAGCCTGA GAACCTAGAC GCTGCTTTAG AGCAAGTTAT TCCATGGATC TCTGCTAAGC TTGCATAA
|
Protein sequence | MYQTTAALRS AFLEYFRTNG HQVVDSSSLV PANDPTLLFT NAGMNQFKDV FLGADKRSYS RATSSQRCVR AGGKHNDLDN VGYTARHHTF FEMLGNFSFG DYFKEEAIHF AWTFLTEELK LPKERLCVTI YDTDDEAFEI WNKKIGVAAE NIIRIGDNKG AAYASDNFWQ MGDTGPCGPC SEIFYDHGDH IWGGRPGTPE EDGDRFIEIW NIVFMQYNRQ ADGEMKPLPK PSVDTGMGIE RIAAIMQGVH SNYEIDIFQA LIKKAAAILG VTDLENKSLR VIADHIRSCA FLIADGVMPS NEGRGYVLRR IIRRAVRHGN KLGATESFFY KLVPTLIEVM GADAAKGLQE TQAIVEKSLK AEEEQFARTL ERGLGILDAA LNELATNVLD GETAFKLYDT YGFPVDLTAD VCRERDITVD EAGFEVAMAA QRSRAQAAGQ FETDYNEGLI IDEQSGFTGY TDLNNQATVT AIFKAGESVD SIVAGDDVVI VLDNTPFYGE SGGQCGDEGV LIADGIEFTV TDTQKYGQAI GHIGRVATGT VKVGQVVTAN VDKKLRHRTE LNHSVTHLLH AALRQVLGTH VSQKGSLVDP ERLRFDFSHF EGVKAHELKE VEELVNTQIR RNHELTAEVM DIETAKEKGA MALFGEKYDS EVRVVTMGDF SIELCGGTHV GRTGDIGLFK ITSEGGIAAG IRRIEAVTGA AAMAYVAKQQ AQLEEAAALL KGDSASVVAK LKAQLDKTKL LEKELSQLKD KLAAATSADL AGEAVDVNGV KVLVKKLEGV DAGALRGLQD ELKQKLQSGI VVLAIAGEDK VNMIVGVTKD LTGKVKAGEL VASIAVQVGG KGGGRPDMAQ AGGSQPENLD AALEQVIPWI SAKLA
|
| |