| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_1189 |
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| Symbol | |
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| ID | 5661588 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella pealeana ATCC 700345 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009901 |
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| Strand | + |
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| Start bp | 1443055 |
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| End bp | 1444119 |
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| Gene Length | 1065 bp |
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| Protein Length | 354 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 641235741 |
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| Product | tRNA pseudouridine synthase D TruD |
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| Protein accession | YP_001501051 |
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| Protein GI | 157961017 |
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| COG category | [S] Function unknown |
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| COG ID | [COG0585] Uncharacterized conserved protein |
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| TIGRFAM ID | [TIGR00094] tRNA pseudouridine synthase, TruD family |
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Plasmid Coverage information |
| Num covering plasmid clones | 28 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCGAAC TACATTATTT ATACGGCAAG CCGACATCGA CAGCCGACCT GCGCACCCAC
AATAGTGACT TTCAGGTACA AGAAATTCTA CCATTTGCCC CTACGGGTGA AGGTGAGCAC
CATTTACTGC ATATTCGCAA AGAGGGACTC AACACAGTTG AAGTGGCTAA AATGCTATCT
GGCTTTGCTC ATGTGCACCC GAAAGAGGTG ACCTACGCAG GGCAAAAAGA TAAGCACGCG
ATCACCGAGC AATGGTTTGG CGTACGTATT CCCGGAAAGG AAACACCAAA CTGGGAGCAA
CTAAATAGCG AACAGATCAC TGTACTTAGC TCCTCTAGAC ACAGTAAGAA GCTACGTATT
GGTGCGTTGG CTGGTAATCG TTTTACCTTA ACCTTGCGCA ATGTCTCTGA TATGAGTGAT
GTGGTTGCGC GCATTGAGAA GATTGGTGAG CAGGGTGTTC CAAACTACTT TGGTGAGCAG
CGCTTTGGCC ATGACGGCAA AAACCTTATA TTTGGTCGTC AGATGTTTAC AGGCCGTAAA
GTGAAAGACA GAAACAAACG TAGTATGTAT CTTTCTGCTG TGCGCTCAAA TCTATTCAAT
ATGGCTGTAT CCACGCGTTT AGCCCAACAT GGTACAGGCA CTCTTACTGG CGACTGTGTC
ATGCTTGCTG GGAGCAAGAG TTATTTTGTG GCTGAGCAGT GGGATGAAAC TTTAGTCGAG
CGTTTAGCTA AAAAAGACAT ACAACTGTCG GCGCCATTAT GGGGACGTGG TTTACCGCTT
GCACAAGCTG AGGCTGCCGA GTGTGAGGCG CAAGCGCTTG AATCACTTGC AACTGATAAA
GATGGTTTAG AGCATGCGGG GCTTAGCCAA GAAAGACGCG CATTGTTACT TGAGCCACAA
CATCTGCAAT ATGAAGTAGA CGAAGATACC ATTATTCTAA AATTTGCATT ACCATCAGGT
TCTTATGCTA CATCGGTACT ACGAGAGTTA TTTGTTTACC AGGATGTTCA GGAAGTCGCT
CGAAAGCAGA TGCTAGCCGC ACAAAATAGC GGCGAGGCAC AATGA
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| Protein sequence | MSELHYLYGK PTSTADLRTH NSDFQVQEIL PFAPTGEGEH HLLHIRKEGL NTVEVAKMLS
GFAHVHPKEV TYAGQKDKHA ITEQWFGVRI PGKETPNWEQ LNSEQITVLS SSRHSKKLRI
GALAGNRFTL TLRNVSDMSD VVARIEKIGE QGVPNYFGEQ RFGHDGKNLI FGRQMFTGRK
VKDRNKRSMY LSAVRSNLFN MAVSTRLAQH GTGTLTGDCV MLAGSKSYFV AEQWDETLVE
RLAKKDIQLS APLWGRGLPL AQAEAAECEA QALESLATDK DGLEHAGLSQ ERRALLLEPQ
HLQYEVDEDT IILKFALPSG SYATSVLREL FVYQDVQEVA RKQMLAAQNS GEAQ
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