| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_1012 |
|---|
| Symbol | gltD |
|---|
| ID | 5661411 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella pealeana ATCC 700345 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009901 |
|---|
| Strand | - |
|---|
| Start bp | 1230944 |
|---|
| End bp | 1232353 |
|---|
| Gene Length | 1410 bp |
|---|
| Protein Length | 469 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 641235558 |
|---|
| Product | glutamate synthase subunit beta |
|---|
| Protein accession | YP_001500874 |
|---|
| Protein GI | 157960840 |
|---|
| COG category | [E] Amino acid transport and metabolism
[R] General function prediction only |
|---|
| COG ID | [COG0493] NADPH-dependent glutamate synthase beta chain and related oxidoreductases |
|---|
| TIGRFAM ID | [TIGR01318] glutamate synthase small subunit family protein, proteobacterial |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 34 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGCAATG ATTTTCAGTT TCTTGAAGTG GGTCGTAAAG ACCCAACTAA ACACGCCGCC
AGACAGCGTG CCACACAATT TATTGAGATT TATCAGCCTT TTGCCCAACC TCAGGTAAAA
GAGCAAGCCG ATCGCTGCCT AGACTGTGGT AATCCTTATT GTGAATGGAA ATGCCCGCTG
CATAATTACA TTCCCAATTG GCTGCTATTA GCTAAGCAAG GGCGCATCAT GGAAGCGGCA
GAGTTGGTCC ACGAAACCAA TACTTTGCCA GAGATCTGCG GCAGGGTATG CCCGCAAGAT
AGACTGTGCG AAGGCGCTTG TACCCTAAAT GAAGAGTTCG GAGCCGTTAC CATAGGTAAT
GTGGAAAAAT ACATTACCGA TACGGCGATC TCACAGGGCT GGCGCCCTGA TATGTCTAAG
GTGACACAGC GTAAAGAACG GGTGGCCATC ATTGGCGCGG GCCCTGCGGG ACTTGGCTGC
GCCGATATCT TGGCCCGCAA CGGCATCAAA GCCGTGGTCT ATGACAAGAA CCCACAGATA
GGTGGCCTGC TCACCTACGG TATTCCGTCA TTTAAACTCG ATAAAGAGGT GATGCAAATT
CGCCGTAACG TGCTTGAAGG CATGGGCATC GAGTTTAAGC TCGGCGTCAC CGTCGGCAAG
GATATCGACT TTAAGCAATT GATTGAAGAG TACGATGCGG TATTCCTCGG GATGGGTACC
TACACCGCCA TGAAGGCGAA CCTTATGGGA GAAGATGCTG ATGGCGTACA TCAGGCACTA
CCCTACCTTA TCGGTAACAC CCATAACGTT ATGGGCACCG AGTGCCTTGA AAATCCTTAC
CTCAGTCTTA AAGGCAAGCG TGTAGTGGTG TTAGGTGGAG GGGATACCGC TATGGACTGT
GTTCGCACCG CGGTACGTCA AGGTGCCACT CAAGTCATTT GTGCCTATCG CCGAGATGAA
CAGAACATGC CGGGTTCACG CCGTGAAGTG CAGAATGCCC GTGAAGAGGG AGTCGAGTTC
TTATTTAACC GCCAGCCGAC GGCAATCAAA ACTGTCGATG GCAAAGTGGT TGGTATCGAA
TGTATCGAAA CTCAATTGGG AGAGGCCGAT GAAAGTGGTC GTCGCCGCCC TGAGCCAATA
GCGGGTAGTG AGCAGGTTTT AGATACCGAT GCGCTTATCA TCGCCTTCGG CTTTCAGCCA
AGTCCTGCAA CTTGGTTAAC GGATCACAAT ATTGAGCTCA ATGAGTGGGG CTTAGTCAAA
GCGCCAAAGC TTGCCGATAA TCCATTTCAA ACCAGTAACC CTAAGGTGTT TGCTGGCGGC
GATATGGTGC GCGGCTCGGA CCTAGTCGTC ACAGCCATTG CCGAAGGACG TGATGCCGCC
ATGGGCATTT TAAATTACTT AGAGGACTAA
|
|---|
| Protein sequence | MSNDFQFLEV GRKDPTKHAA RQRATQFIEI YQPFAQPQVK EQADRCLDCG NPYCEWKCPL
HNYIPNWLLL AKQGRIMEAA ELVHETNTLP EICGRVCPQD RLCEGACTLN EEFGAVTIGN
VEKYITDTAI SQGWRPDMSK VTQRKERVAI IGAGPAGLGC ADILARNGIK AVVYDKNPQI
GGLLTYGIPS FKLDKEVMQI RRNVLEGMGI EFKLGVTVGK DIDFKQLIEE YDAVFLGMGT
YTAMKANLMG EDADGVHQAL PYLIGNTHNV MGTECLENPY LSLKGKRVVV LGGGDTAMDC
VRTAVRQGAT QVICAYRRDE QNMPGSRREV QNAREEGVEF LFNRQPTAIK TVDGKVVGIE
CIETQLGEAD ESGRRRPEPI AGSEQVLDTD ALIIAFGFQP SPATWLTDHN IELNEWGLVK
APKLADNPFQ TSNPKVFAGG DMVRGSDLVV TAIAEGRDAA MGILNYLED
|
|---|
| |