| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_0478 |
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| Symbol | |
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| ID | 5660878 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella pealeana ATCC 700345 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009901 |
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| Strand | - |
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| Start bp | 587512 |
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| End bp | 589494 |
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| Gene Length | 1983 bp |
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| Protein Length | 660 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 641235016 |
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| Product | cytochrome c-type biogenesis protein CcmF |
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| Protein accession | YP_001500341 |
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| Protein GI | 157960307 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG1138] Cytochrome c biogenesis factor |
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| TIGRFAM ID | [TIGR00353] c-type cytochrome biogenesis protein CcmF
[TIGR03145] cytochrome c nitrate reductase biogenesis protein NrfE |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 33 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATCCCAG AGCTAGGACT TATTTTCCTT ATCATTAGCA CAGTCACGGC GGTGTTACTT
GCGTTTATTC CGCTCTATGC GTCATATACT AAAAACCATT ACTTATTTAG TTATGTAAAA
ACATTAACCG CATTAATGAC GGTGACCATT AGCGCTTCTA TATTATGTTT ACTTGTTTCG
TTTTTACTCG ATGACTTCTC GGTGGCTTAT GTAGCCAACC ACTCTAATAC TCAGCTAGCG
ATCCTATATA AGGTGGCTGC GGTTTGGGGT AGCCATGAAG GCTCGATGCT GTTTTGGGTA
GTGTCTATCG CAATTTGGGG CTGCTTGATT GTATTCTCGT CGCGCTATCA AGACCCACTA
TTTATCGGCC GCATGATCGC CATACTGGCG TTTGTGATTG CAGGCTTTAA CCTGTTTATG
CTGTTCACTT CAAACCCTTT TGCCCGCTTG CTCCCCAACT TCCCAATCGA GGGGCGCGAC
CTTAACCCGA TTTTACAAGA CATAGGCTTG ATCTTTCATC CACCCATGCT ATTCCTCGGC
TATGTTGGCC TGACAGTCAC TTTTGCCGCC GCGATTGCAG CGCTACTTGG TGGCAAGTTT
ACTCAACAAC ATGCTGGCTA CCTGCGCCCT TGGGTACTTA TGGCTTGGGT ATTTTTAACT
GGCGGCAATG CCTTTGGTTC TTGGTGGGCT TATAACGAAC TTGGTTGGGG AGGATGGTGG
TTCTGGGATC CGGTGGAAAA CGCCTCGTTT ATTCCCTGGC TTGTGGCAAC CGCGCTATTA
CATAGCGTTG TTCTGAGTCA GCAGCGTAGC AGTTTTAAGA TCACTACCCT ATTGCTGTGT
TTACTGGCAT TCTCATTGAG CTTATTAGGC ACCTTCTTAG TGCGATCTGG AATCGTGCAG
TCTGTACACG CCTTTGCTTC AGACCCTACT CGCGGCATGT CGATTCTATT CCTATTGGGT
GTTTTTGTGT GTGGCGCCTT AACCCTGTTT GCCTTAAAGG CTCATTTGAT TAAGTCTAAA
TCTGACTTTG CCCTCGTCTC ACGAGATAGC GTGATGTTGC TCGGCAACAT CGTCTTAATC
GTGGCCGCTA TCTCTGTGCT ACTCGGTACC TTCTATCCAC TGTTATTCGA ACTATTGAAT
CTAGGAACCC TATCGGTTGG CGCGCCCTAC TTTAACAGCA TCTTCGTGCC ACTGACCTTT
GTTGCCGTAC TATTGATGGG CGCCGCACCT TTGATTAAAT GTCAGCAATC TAGTCATCGT
TTATACCTTC TTGCAGGCCT ATTCGCCGCA GCGGCAAGCA TTGGCGTATT GGTTGCACTA
CAAACCCGTG GTGGTTTCAA CCCTTGGGTA TGGATGGGTG CTACTTCAGC TAGCTGGATA
TTACTAACTC TTGGCTACTT AATGTTTAAC CTACGCCAGC AAGGATTAGC CGTTATCGCT
AACAAGTCGG CCATGTTGAT CGCTCACCTT GGTGTGGCTG TCACAATTAT CGGCGCTACA
GCCGTATCCA ACTTTGAAAC GGAGGAGTTA CTCAGAATGG GGCCGGGTCA AGGCAAGGTC
GTGGCTGGCT ACACCTTCGT CTATGAAGAT ACTGTCGATG TTGAATCAAG CAGCTACACC
GCGATTCAGG CTAATATTCG CGTGACCGAT GTGGATGATA AGTTTATTGG CTATATCACC
CCGCAAAGAC AAACCTTTAA GACTAACGCC ATGGAGACGA CTCAAGCGGG CATCATGCGT
AATTTAGTGC GGGATCTGTA TGTATCGAGC GGCCAGCAAC TGAGTGAAAC CGAATACCTA
GTACGTATTA GCCATAAGCC GCTTGCTTGC TGGATTTGGA TTGGTGGCCT AATGATGATG
CTAGGTGGTT TTATTGCCGC GATGTCAGGG CTTTATAGCT TGCGTCAGCA ACGCACTGCT
GTTGATTCAT CTGTCGCGAC GACGCAATAC GCAAATACAT ACAGCGCCAA GGAGCTAGCA
TGA
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| Protein sequence | MIPELGLIFL IISTVTAVLL AFIPLYASYT KNHYLFSYVK TLTALMTVTI SASILCLLVS
FLLDDFSVAY VANHSNTQLA ILYKVAAVWG SHEGSMLFWV VSIAIWGCLI VFSSRYQDPL
FIGRMIAILA FVIAGFNLFM LFTSNPFARL LPNFPIEGRD LNPILQDIGL IFHPPMLFLG
YVGLTVTFAA AIAALLGGKF TQQHAGYLRP WVLMAWVFLT GGNAFGSWWA YNELGWGGWW
FWDPVENASF IPWLVATALL HSVVLSQQRS SFKITTLLLC LLAFSLSLLG TFLVRSGIVQ
SVHAFASDPT RGMSILFLLG VFVCGALTLF ALKAHLIKSK SDFALVSRDS VMLLGNIVLI
VAAISVLLGT FYPLLFELLN LGTLSVGAPY FNSIFVPLTF VAVLLMGAAP LIKCQQSSHR
LYLLAGLFAA AASIGVLVAL QTRGGFNPWV WMGATSASWI LLTLGYLMFN LRQQGLAVIA
NKSAMLIAHL GVAVTIIGAT AVSNFETEEL LRMGPGQGKV VAGYTFVYED TVDVESSSYT
AIQANIRVTD VDDKFIGYIT PQRQTFKTNA METTQAGIMR NLVRDLYVSS GQQLSETEYL
VRISHKPLAC WIWIGGLMMM LGGFIAAMSG LYSLRQQRTA VDSSVATTQY ANTYSAKELA
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