| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_0153 |
|---|
| Symbol | |
|---|
| ID | 5660554 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella pealeana ATCC 700345 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009901 |
|---|
| Strand | + |
|---|
| Start bp | 169107 |
|---|
| End bp | 169583 |
|---|
| Gene Length | 477 bp |
|---|
| Protein Length | 158 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 641234666 |
|---|
| Product | general secretion pathway M protein |
|---|
| Protein accession | YP_001500017 |
|---|
| Protein GI | 157959983 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3149] Type II secretory pathway, component PulM |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.122002 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGAAAACT TTAAAGCTTG GTGGGGTGGA TTGGTTCTTC GTGAGCAGCA GATGGTTGCG
GCTTGTGGTG TGGTGTTAGT GATAGGCATT TTGTATTGGG GCGTTTGGAC GCCAATAGCC
AATGCGGAAG ATGAAGCTCA GCGTAGACTC GAGGGTCAAC AAAGTACCCT TAATTACGTT
AAGCAAACCG CGAATCGTAT TGCTGGTTTG AAACAAAGTG GTGGTAGTAA CGCTTTTAGG
GGCAGTTTGA GTGCCGCGGT TAACCAAACG GCGGGTGCGT TTGGCTTAAC TATCACGCGT
ATGCAGCCAC AAGGTAATAA GATCCAAGTG TGGATGGATG AAGTCCCTTT CGATACGTTA
TTGAATTATT TAAACGAATT GGTGCAGAAC AAGGGCTTGT CATTAGAAAG CTTAGACTTA
GCAGAGTCTG ATACTCCAGG CTATGTTAAT GTTCGTCGTA TTCAGCTGTC CAAGTAA
|
|---|
| Protein sequence | MENFKAWWGG LVLREQQMVA ACGVVLVIGI LYWGVWTPIA NAEDEAQRRL EGQQSTLNYV
KQTANRIAGL KQSGGSNAFR GSLSAAVNQT AGAFGLTITR MQPQGNKIQV WMDEVPFDTL
LNYLNELVQN KGLSLESLDL AESDTPGYVN VRRIQLSK
|
|---|
| |