| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Snas_0199 |
|---|
| Symbol | |
|---|
| ID | 8881377 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Stackebrandtia nassauensis DSM 44728 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013947 |
|---|
| Strand | + |
|---|
| Start bp | 212583 |
|---|
| End bp | 213800 |
|---|
| Gene Length | 1218 bp |
|---|
| Protein Length | 405 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | |
|---|
| Product | putative RNA polymerase sigma-24 subunit, ECF subfamily |
|---|
| Protein accession | YP_003509011 |
|---|
| Protein GI | 291297733 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.646192 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 0.0689885 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCGCCG CGGACACGGT CGAGCGGGTG TACCGCGAGC AGCGCACCCG GATGCTCGCC
GCGCTGGTGC GGGCGTTCGG CGACATCGAG CTCGCCGAGG AGACCCTGCA CGAGGCCTGC
GCGCAGGCGA TGGACAGCTG GGCGGCGGGT GTCCCGGACG ACCCGGTGGG TTGGCTGGTC
ACGGTGGCGC GCAATCGCGG CGTGGACTGG ATCCGCCGCG CCCGGGTGGG TCGCGAGAAG
GCGGAGCTGG CCGGGGCGCG CGCCGAGACG GTGGACATCG AGCCCGATCC GAACAGCCTG
GTGGACGTCG GCGACGACCG GCTGAGCCTG GTCTTCGCCT GCTGTCACCC GGACCTGGAG
CTGCGGGCCC GGGTCGCGCT GACCCTCCAG GTGGTCGCGG GGCTGACCGC CGCGCAGATC
GCGCGGGTCT TCCTGCTCAC CGAGTCCGGG TTGGCGCAAC GACTGGTGCG TGCCAAACGC
AAGCTGCGGG ACACGGGCGC GTCCTTCGAG GTGCCGCCCG ATCACCGACT GCCCGAGCGG
CTGAGCGGGG TGCTCGCGGT GGTGTACCTG ATCTTCACGC AGGGCTACAC GGCCGAGCCC
GGCTCGCGGG ACCACGGTGA ACTGCGGGAC GAGGCGATCC GACTGGGGAC GCTGATCGCG
ACACTGTTCC CGGACGAGCC AGAGGTGTTG GGGCTGTTGG CGTTGATGCT GCTGCACGAC
GCCCGCAGCG CCGCGCGCTA CGACCCGTCC GGTGAGTTGG TCCTGCACGC CGACCAGGAT
CGTTCCACAT GGGACCACGA ACAGATCGCC GAGGGCGTCG CCCTGCTCGG CCGTGCCCTG
CGGCACGGCG CGGCCGGTCC GTACCTGCTG CGGGCGACGA TCGCGGCGCT CCACACCCGA
CCGACCACCG ACTGGCCCCA CATCGTCGGT CTGTATCGGA CGTTGATGGA CGTCGACGAC
TCCCCGGTCG TGGCCCTCAA CCACGCGGTC GCGGTGGCCA TGGACCAGGG CCCCGCCGTG
GGCCTGGCCC TCGTTGACGA ACTCGACCTG CCGACATTCC ATCTCTTCCA CGCCACCCGC
GCCGATCTGC TCCGCCGCCT CGACCGCCGC GACGAGGCCG CCACGGCATA TCGCCGCGCG
TCCGAACTGG CCACCAACCC CGCCGACCGG CGCTTTCTCG ACCGCCGCCT GCGCGAGCTG
GGCCCCGACC ACGGTTGA
|
|---|
| Protein sequence | MTAADTVERV YREQRTRMLA ALVRAFGDIE LAEETLHEAC AQAMDSWAAG VPDDPVGWLV
TVARNRGVDW IRRARVGREK AELAGARAET VDIEPDPNSL VDVGDDRLSL VFACCHPDLE
LRARVALTLQ VVAGLTAAQI ARVFLLTESG LAQRLVRAKR KLRDTGASFE VPPDHRLPER
LSGVLAVVYL IFTQGYTAEP GSRDHGELRD EAIRLGTLIA TLFPDEPEVL GLLALMLLHD
ARSAARYDPS GELVLHADQD RSTWDHEQIA EGVALLGRAL RHGAAGPYLL RATIAALHTR
PTTDWPHIVG LYRTLMDVDD SPVVALNHAV AVAMDQGPAV GLALVDELDL PTFHLFHATR
ADLLRRLDRR DEAATAYRRA SELATNPADR RFLDRRLREL GPDHG
|
|---|
| |