| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_6261 |
|---|
| Symbol | |
|---|
| ID | 5320563 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sinorhizobium medicae WSM419 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009621 |
|---|
| Strand | - |
|---|
| Start bp | 1181715 |
|---|
| End bp | 1183118 |
|---|
| Gene Length | 1404 bp |
|---|
| Protein Length | 467 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 640777861 |
|---|
| Product | NoeA host specific nodulation protein |
|---|
| Protein accession | YP_001314793 |
|---|
| Protein GI | 150378198 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG2264] Ribosomal protein L11 methylase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 0.161633 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGGCGGCCG CACCGAGACC CGGACGCGTC GCCGGTTCCT TTAGAGATCC GTCTGGTCAA
GTCTTCCACT TCCAGGATCG CATTCTGCGG ACAATGGATT CGGCTGCTGC AATCGAGTTT
GCCAGTGCTG AGAGAGTAAT GCGACAGCTC GTGGATGAAG GGCGACTCGT CGACTTCTCA
GACGCGGAGC CGAGCCTTCA TCAGCTTTTT CAAGGGAATA TTGCTCGAGT TCTGCAGCAT
CCCCTCCTGG AGCAAATCAC CTACCCATAC GAGTGGTCGT TTGCTGGATT GAAGGCGGCG
GCGCTTTTTC ATCTTCAACT GCAGCTTGAT CTACTTGATC AGGGTTTTTG CCTGTCGGAT
GCGACCGCTT ATAACGTTCA GTTTGAAGGG TCACGACCAA CTTTCATCGA TCATCTGTCT
ATAAAGCCGT ACCGCGATGG ACAGCTTTGG TATGGACATA AGCAGTTTTG TGAGCAGTTC
CTCGTTCCAC TGTTACTACG ATCCGTTTTC GACATCACGC ATCACAGCTG GTATCGCGGC
AACCTCGAAG GGGTGCCGAG TGCGGATTTC GTAAAGCTGC TGAGTACCCG ACATTGGTTT
TCCCACAAGT TGTTCATGCA TATCATTTTG CCTGCAAAGC TGCAGTCATC TAGGACATCG
CAGACCAAGG TAGATCTTGG AGACTCTCGT GCGAGACGGC TTCCTAAGGA TGCCTTCCGC
GCCATGCTCG CCCAACTTTA CAGCTGGATC AGCGGACTGA AAGTTGATGT TGGAAAACAA
TCGGTTTGGC AAGGATACGC TGCGAACAAC ACGTACACAG CTACCCAGAG AAGCGACAAA
GGGCAGTACG TCGCAGAGTT TGTCGCTCAA CACAAGCCGC GAACTATAAT CGACCTTGGC
TGTAATACCG GTGACTTTAG CTACGTAGCT TTGGAGAATG GTGCACAGAA GGCGATCGGC
TTTGATTTCG ACCCGCACGC GCTCGACGCC GCGTTCGACC GGTCAGTTCA GACATCAAAG
AACTTTCTTC CACTCTACCT TGATGCACGT AATCCATCGC CGAGCCAAGG GTGGGGCGAA
CGGGAGCGTC AAGGGTTCAG CTCAAGGTTT TCGGCAGATG CTGTTCTGGC GCTAGCCTTC
GAACATCATT TGGCAATCGC TCACAACGTT CCCCTTGCCG AGGTTGTCGC ATGGGTGACC
CAAGTTGCAC CAAAGGGCAT TATCGAATTC GTTCCGAAGG AGGACGAGAC TGTGCGACGC
ATGTTGGCGG GTCGAGAGGA CATCTTCAGT GACTACAACG AAGAAGCTTT TGCAAGCGCG
CTCAGCCAGA AAGCCCGGGT GGTGAGCAAG CACTTAATAC CCGGCAGCAA ACGAACGTTG
TACACGTTCG AAAGGTCGGA GTAA
|
|---|
| Protein sequence | MAAAPRPGRV AGSFRDPSGQ VFHFQDRILR TMDSAAAIEF ASAERVMRQL VDEGRLVDFS
DAEPSLHQLF QGNIARVLQH PLLEQITYPY EWSFAGLKAA ALFHLQLQLD LLDQGFCLSD
ATAYNVQFEG SRPTFIDHLS IKPYRDGQLW YGHKQFCEQF LVPLLLRSVF DITHHSWYRG
NLEGVPSADF VKLLSTRHWF SHKLFMHIIL PAKLQSSRTS QTKVDLGDSR ARRLPKDAFR
AMLAQLYSWI SGLKVDVGKQ SVWQGYAANN TYTATQRSDK GQYVAEFVAQ HKPRTIIDLG
CNTGDFSYVA LENGAQKAIG FDFDPHALDA AFDRSVQTSK NFLPLYLDAR NPSPSQGWGE
RERQGFSSRF SADAVLALAF EHHLAIAHNV PLAEVVAWVT QVAPKGIIEF VPKEDETVRR
MLAGREDIFS DYNEEAFASA LSQKARVVSK HLIPGSKRTL YTFERSE
|
|---|
| |