| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_6089 |
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| Symbol | |
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| ID | 5320391 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sinorhizobium medicae WSM419 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009621 |
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| Strand | + |
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| Start bp | 1023923 |
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| End bp | 1026844 |
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| Gene Length | 2922 bp |
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| Protein Length | 973 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 640777732 |
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| Product | lanthionine synthetase C family protein |
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| Protein accession | YP_001314664 |
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| Protein GI | 150378069 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG4403] Lantibiotic modifying enzyme |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATCGACG CAAACATCCG AAAAGAGGCA CGAGACAATA CGGCGATAGT AGCCCTTTGG
CCATTGGTGG ACGAGCTTGC CGATCCGGTG GGCAATACAG GCGCGCCTCG TGAGAAAGCC
GGTTCCGAAG ATGCGTTTCT CTCGGGTTTA TGCTTCGCGG CGAGGCAAGA CATTTCGCGA
ACGCCTTGCC TTGCGAAAGA GCTGCCTTTT GTTCACCTGT GGTTTCCTCT GGCCGAAGTC
GCAATGGGGC TTCTGCCGCA AGCCGCGTTG GCGCCAACCG TCATCGGGCA ACTGATTGTA
GCGCTGACAG AGCGCCTTTG CGCGTTGGGG GCAGATGCAC TTCAGCAAAT ACTTCAAGAG
CGGCGTGGCG CTGGCGCGTC CGTCATCGCC GCATTAGCCC CGGAGAAAGA CCCGAGCGCC
GCGAAATGCG AGATCTATGA TCGCTTGACA GACGAACTGC GGCAGACACA TCTGGCGGAA
CTGCTGGATC GCTTTCCGGT CCTTCGACGC TTGATTCCTT TCACAATTGC AGTCTGGATC
AGAAATCTTC GCGAGCTTTT AGCCCGCCTC GAGGCGGATC GGACAGCAAT CGCTCAAAAC
TTCCGCCTTC CTGAAGACGC GGCGCTTTCC GGCATGCAAT TTGCTGTCGG CGATACCCAT
AAGGGTGGAC GGAGCGTCGT GCTGCTGGAA TTCACTTGGC AGGGGCGGCA GACAAAACTC
GTCTACAAGC CCCGTAACCT CGCCCTCGAG GCGGCGTTCC AGAATTTGCT GGCGGATCCG
CGCGCTAGCA TCGGTCTTTC ACCTCTTCCC GGGCTGAAAA TCTGGTGCGC AGAAGACTAT
GGCTATATGG AATTTGTTGA GGGCGCGCCC TGCGACAACG AAGATGTACT GCAGGCATTC
TATCGCAGTG CCGGCAGACT GGCCGCTCTC CTGCATGTTT TAGGTTACAC GGATGGTCAC
CACGAAAACC TCGTGGCGCA TCACAGCCAT CTATATGTTA TAGACGCCGA AACGCTTTTG
ACGCCCTTCG AGAAGCCAGC AATTCGCCGT CCACGGCCGG GGGACAGCCT GGGTGCGGCC
CAGACGGCAT GGTCTTGGTT CGACACCACC GTTGCACGAA CCGAGCTATT TCCAGCCTGG
ACCTTACTGG GCCTCGCACG CGATGCCGTC GATACGAGCG CTTTCGGCAT CGATCCTCAG
GAATGGCCAA GGCAAATTCC CGGCTGGCAC TCCATCAATA CGGATAACAT GGCCCGCACC
GTCATGATCG GGGAGCTCGT TCGCACGCAA TCATTGCCCG TAACGTCAGA CAGGAAGAAT
CCATTTTTCC GTCATCGTAA GCTCTTCATG GCCGGATTCC ATGCGCAGTG CAGGTCCATC
ATCGCCAACA AACCCGTTTG GCTGGGGGAA GATGGCCTGT TGCAGGCCTT CAACGGCTGC
AAGGGGCGCG CTGTCATTCG CGCGACACGG ATCTATGCGG CGCTTGCACG CCGTCAGTTG
ACGGCGGAAG CATTGCGAAG CGAGCAGTCC CAAGCAGACG TTCTTTATCC GCTGGAGCGC
CTTTTTGCGC CGCTTGCAGA TCGTCAGGAC GTTTCAAGCC TATGCGCCTC TGAAAAGCTG
CAAATGCGCC AACTGGATAT TCCCGTATTC ACGCACACGG TCTCGCAAAC GGCCCTGAAC
CTGACCGGCG ATCAACGAAT CGATGACTAT TTCGAGACGA GTGGCTTGGC GGCAAGCCGG
GAGCGAATAG AGGCATTGTC CTGCGAAAGG ATCGAGCGTG AGATCGAAAC AATAGACGCT
TTGGCATCGG CCAAGGCATT GCGGCTCGCG CAGCACGGGC GGAGTTGCGA GAACAGCCTC
CAACCGATCA CCAATCCGAC AGACCAGCTT TTATCGGAAA TCAGGCGTCG ATCAGATGGC
TGGATCGGAT TCGATCTCGC GCCGGATGGT ATCCGGTTCT GCTACCAGCC GCTTGGAATG
TCGCTCGTGA GCGGCACACT TGGTCTTGCC GTCTATCTTG CAGCGACCGG AAGACCAGAG
GCCTGCCATA TTGCAGAAAA TTTGGCTGAG CCGCTTCTGA GGCTGGCGGA GAGCGGAACA
TCGGCTGAGC GCCTGCGGTG GTGGCGAGAC CTGCCCATCG GGTTGCGTGG CAGCGGCGGA
CAGCTTCTGG CATTGTCGGC ACTGCAGAGG CTTAGCATAA TGGCCGATCG AATCCCGCAC
GCCATGCAGC AGTTGGTTGC AGTTCTCGAT CGGGCCTTGC TCGAAGATAA GCCTTGGGAT
GTCTGGTCCG GATATGCGGG CTTGCTGGGT CCGCTCCTAC TCGTGAATTC CGACACAGCG
GACACTCAGG CCGAGATGGT TGCCTGCCGT CTGGCCGACT GGACCAGCAG AGAGGCGGAA
ACGGCACCGT CTGGCTTTGC GCAAGGTGCT TTTGGTGTAT TGGCTGCGCT CAGTCAGTTT
GCGCATGCAT CAGGGAACGC AAACATTCGC GCTTCGGTTC AATCCCTGCT TCAACACAGC
TCGGAAGCCT TCTGGCGCTT CGGCCCTCGC GCCGGTTCTG AATGGAGTTG CGGCATTGCA
GGTCACATCA TCACATGCCT GTGCCTGCGT CATGACCAAG AATGGCGAGC GAATGCGGAT
GCTGCAATCC GGCGCGGGGT GATCGGATTG GCGTCCCTGC CTAACCAAGG AGCCGGTATC
CACAGCGGCA CCGCCGGCGT CGAGATGGCC TGCGCGTCAT CAGCACAGGC AACTGGCAAT
TTGCCATGCT CTTCAGACAC CCAGAAGTAC TGCGATCCAC GCCATCTCGG TCTGTTCACT
GGCGTTGCTG GTATAGGGTT CGCACAGATC CGGGACGAGC GGTCCAACGC GGCTCGCGAC
CTTATCATCT CTGCTGGTCT TCTTCCGACC ATAGGCCATT GA
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| Protein sequence | MIDANIRKEA RDNTAIVALW PLVDELADPV GNTGAPREKA GSEDAFLSGL CFAARQDISR
TPCLAKELPF VHLWFPLAEV AMGLLPQAAL APTVIGQLIV ALTERLCALG ADALQQILQE
RRGAGASVIA ALAPEKDPSA AKCEIYDRLT DELRQTHLAE LLDRFPVLRR LIPFTIAVWI
RNLRELLARL EADRTAIAQN FRLPEDAALS GMQFAVGDTH KGGRSVVLLE FTWQGRQTKL
VYKPRNLALE AAFQNLLADP RASIGLSPLP GLKIWCAEDY GYMEFVEGAP CDNEDVLQAF
YRSAGRLAAL LHVLGYTDGH HENLVAHHSH LYVIDAETLL TPFEKPAIRR PRPGDSLGAA
QTAWSWFDTT VARTELFPAW TLLGLARDAV DTSAFGIDPQ EWPRQIPGWH SINTDNMART
VMIGELVRTQ SLPVTSDRKN PFFRHRKLFM AGFHAQCRSI IANKPVWLGE DGLLQAFNGC
KGRAVIRATR IYAALARRQL TAEALRSEQS QADVLYPLER LFAPLADRQD VSSLCASEKL
QMRQLDIPVF THTVSQTALN LTGDQRIDDY FETSGLAASR ERIEALSCER IEREIETIDA
LASAKALRLA QHGRSCENSL QPITNPTDQL LSEIRRRSDG WIGFDLAPDG IRFCYQPLGM
SLVSGTLGLA VYLAATGRPE ACHIAENLAE PLLRLAESGT SAERLRWWRD LPIGLRGSGG
QLLALSALQR LSIMADRIPH AMQQLVAVLD RALLEDKPWD VWSGYAGLLG PLLLVNSDTA
DTQAEMVACR LADWTSREAE TAPSGFAQGA FGVLAALSQF AHASGNANIR ASVQSLLQHS
SEAFWRFGPR AGSEWSCGIA GHIITCLCLR HDQEWRANAD AAIRRGVIGL ASLPNQGAGI
HSGTAGVEMA CASSAQATGN LPCSSDTQKY CDPRHLGLFT GVAGIGFAQI RDERSNAARD
LIISAGLLPT IGH
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