| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_5825 |
|---|
| Symbol | |
|---|
| ID | 5320127 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sinorhizobium medicae WSM419 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009621 |
|---|
| Strand | - |
|---|
| Start bp | 791897 |
|---|
| End bp | 792727 |
|---|
| Gene Length | 831 bp |
|---|
| Protein Length | 276 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 640777521 |
|---|
| Product | alpha/beta hydrolase fold |
|---|
| Protein accession | YP_001314453 |
|---|
| Protein GI | 150377858 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0596] Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.0224159 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 0.292705 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCTCCA TTACAACCAG CAACGGTGTT CAACTTTTCT ACAAAGACTG GGGACCGAAG
TCCGCTCAAC CGATCGTCTT TCACCACGGC TGGCCGCTCA GCTCCGACGA TTGGGATAAT
CAGATGCTCT TCTTCCTCAG CAAGGGCTTT CGCGTGATCG CTCATGATCG CCGCGGTCAT
GGCCGGTCTA ACCAGGTGAG CGACGGTCAC GACATGGATC ACTATGCCTC CGATGTTGCC
GCAATGATCG ACTACCTCGA TCTTCGCAAC GCTATCCACG TCGGACACTC TACCGGGGGC
GGTGAAGCCG CGCGGTATGT CGCACGTTAC GGGAAGGGCC GCGTTGCCAA ACTAATCCTG
ATTGCGGCCG TGCCGCCATT GATGCTGAAG ACCGCCGCCA ATCCCGGCGG CTTGCCTATC
GACGCATTCG ACGGATTGCG CAGCCAACTG GTCGCGAACC GTTCGCAGTT CTATCACGAT
TTTCCGAGTG GCCCGTTCTA TGGTTACAAC CGCCCGGGTT CGGAGCCTTC GCAGGCGGTC
ATCTCAAACT GGTGGCGTCA GGGTATGATG GGCGGTGCGA AAGCGCATTA CGATGGCATC
AAGGCATTCT CGGAAACAGA TTTCACCGAG GACCTGAAGA GCATCACAGT GCCGGCGCTG
GTGTTGCATG GCGATGACGA CCAGATCGTC CCGATCGGCG CATCTGCTCC GTTGTCGGCG
AAGCTCCTGC AGGCCGGGAC GCTGAAGATC TACGAGAATC TGCCGCATGG GCTGTGCACG
ACCCATGCAG ATGTCATCAA TGCCGACGTG CTGGCGTTCA TCGCCGGCTA A
|
|---|
| Protein sequence | MTSITTSNGV QLFYKDWGPK SAQPIVFHHG WPLSSDDWDN QMLFFLSKGF RVIAHDRRGH
GRSNQVSDGH DMDHYASDVA AMIDYLDLRN AIHVGHSTGG GEAARYVARY GKGRVAKLIL
IAAVPPLMLK TAANPGGLPI DAFDGLRSQL VANRSQFYHD FPSGPFYGYN RPGSEPSQAV
ISNWWRQGMM GGAKAHYDGI KAFSETDFTE DLKSITVPAL VLHGDDDQIV PIGASAPLSA
KLLQAGTLKI YENLPHGLCT THADVINADV LAFIAG
|
|---|
| |