Gene Smed_5817 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmed_5817 
Symbol 
ID5320119 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSinorhizobium medicae WSM419 
KingdomBacteria 
Replicon accessionNC_009621 
Strand
Start bp784305 
End bp784745 
Gene Length441 bp 
Protein Length146 aa 
Translation table11 
GC content59% 
IMG OID640777514 
ProductMarR family transcriptional regulator 
Protein accessionYP_001314446 
Protein GI150377851 
COG category[K] Transcription 
COG ID[COG1846] Transcriptional regulators 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones18 
Fosmid unclonability p-value0.127726 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGTTAAAGG AACTCGTTGG GGATCGTGAA CTGGGAACGC AGCTGTCCTT TGCGCTCTAT 
GGGGCGGCCA ACCGCATGGC ACGCCTGCAC AAACCATTTC TTGAGCCGCT GGGACTGACG
TTTCCGCAGT ACCTGGTAAT GCTCGAACTG TATGGCGGCA CGCCGCGCAG TGTGGGGGAA
TTGGGCGCGG CACTTGGCAT GGATACTGGA ACGATCACGC CTCTTCTCAA GCGCCTTGAA
GCCCTTTCCA TGATTACCCG CACCCGCGAC AGAAATGACG AGCGCCGGGT CATGATCAAC
CTGACAGAAG GCGGAGAGGC GCTTCGAGAA GAGCTCTGGA TTGTCACCGA GAAGATCAAG
ACTGCATGCC AACTCGACCA TGACGGTCTC GCAAAACTCC GGGACACGCT GACGGCGCTG
GCACGTCCTG CGCACGACTA A
 
Protein sequence
MLKELVGDRE LGTQLSFALY GAANRMARLH KPFLEPLGLT FPQYLVMLEL YGGTPRSVGE 
LGAALGMDTG TITPLLKRLE ALSMITRTRD RNDERRVMIN LTEGGEALRE ELWIVTEKIK
TACQLDHDGL AKLRDTLTAL ARPAHD