| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_5558 |
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| Symbol | |
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| ID | 5319860 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sinorhizobium medicae WSM419 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009621 |
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| Strand | + |
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| Start bp | 525396 |
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| End bp | 526571 |
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| Gene Length | 1176 bp |
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| Protein Length | 391 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 640777307 |
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| Product | binding-protein-dependent transport systems inner membrane component |
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| Protein accession | YP_001314239 |
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| Protein GI | 150377644 |
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| COG category | [E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism |
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| COG ID | [COG1173] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.203602 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.0670857 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCGATCA ATACACAGTC TGTTTTCGTC ATGGAAACCG GTCCTGCCGT CAGCCCCCTG
AATTCGGGTG GCAAGGTGGT GACCTTGGAA GCCGCCGGCC AGTGGACGCT CATTTGCAAG
CGCTTTCTCC GTCACAAGAT AGCGGCCTTC GCCGCGGGCA TCATTCTGGT GCTCTATCTG
ATCGGTGCTT TCGCCGAGTT CTTAGCACCC GGTCTGCCGA ACGCGTCGAG GCCGCAATAT
ACATTTGCGC CGCCTCAGAG GATCTCGCTG TTTACACATA CGGACAATGC CGGTACGCGA
TTCCTGCCCC ACGTCAAGGG TTACCGGATC GAGATCGAGC CCAAGGCCCT TCGCCGCAGC
TTTGTCGTAG ATGAGGCCAA AATCATTCCG ATCGGCTTCT TTGTCAAAGG CGCCCCATAC
AAGCTGTGGG GCGTCATCCC GATGGAAACC CATCTTGTCG GACCCCTAGA CGCACGCGAG
CCGATGTATC TGCTGGGCTC CGATCGCCTC GGGCGGGATC TCATGAGCCG CCTGATCTAC
GGAACCCGCG TCTCCATGTC GATCGGCCTG GTGGGGGTGG CGATCTCGCT CACGCTCGGC
GTCGTCATGG GAGCAGTTTC GGGTTATTAC GGCGGCTGGG TCGACACCCT GATCCAGAGA
GTCATCGAGA TCGTCAGCGC CATGCCGACC ATCCCTCTCT GGCTGGGACT GGCAGCCGCC
ATCCCGCTCA GCTGGTCTCC GCTGTCGGTG TACTTCATGG TCACGCTCAT CGTTTCGCTG
CTTAGCTGGA CGGGACTGGC GCGAGAGGTG CGCGGACGAT TTTTCGCGTT GCGCGGCGAT
GATTTCGTCA CGGCCGCAAG GCTTGACGGA GCCGGTGAGC GCCGGATCAT TTTCCGTCAC
ATCCTGCCGT CGCTCACCAG CCACATACTC GCCGTCGTGA CGCTCGCAAT CCCGACGATG
ATCGTGGCGG AAACCTCGCT GTCATTCCTC GGCGTCGGCC TGAAGCCGCC GGTCGTCAGC
TGGGGCGTGC TGCTGCAGGA TGCCCAGAAC GTGCGCACCG TCGCAACCGC GCCCTGGCTG
CTGATCTGGC CGAGCCTTGC CGTGGTTCTT GCTGTGCTCT CCTTCAATTT CTTCGGCGAC
GGACTGCGCG ATGCAGCCGA TCCCTACGAT ACTTGA
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| Protein sequence | MSINTQSVFV METGPAVSPL NSGGKVVTLE AAGQWTLICK RFLRHKIAAF AAGIILVLYL
IGAFAEFLAP GLPNASRPQY TFAPPQRISL FTHTDNAGTR FLPHVKGYRI EIEPKALRRS
FVVDEAKIIP IGFFVKGAPY KLWGVIPMET HLVGPLDARE PMYLLGSDRL GRDLMSRLIY
GTRVSMSIGL VGVAISLTLG VVMGAVSGYY GGWVDTLIQR VIEIVSAMPT IPLWLGLAAA
IPLSWSPLSV YFMVTLIVSL LSWTGLAREV RGRFFALRGD DFVTAARLDG AGERRIIFRH
ILPSLTSHIL AVVTLAIPTM IVAETSLSFL GVGLKPPVVS WGVLLQDAQN VRTVATAPWL
LIWPSLAVVL AVLSFNFFGD GLRDAADPYD T
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