| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_5469 |
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| Symbol | |
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| ID | 5319771 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sinorhizobium medicae WSM419 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009621 |
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| Strand | + |
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| Start bp | 437084 |
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| End bp | 438169 |
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| Gene Length | 1086 bp |
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| Protein Length | 361 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 640777230 |
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| Product | extracellular solute-binding protein |
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| Protein accession | YP_001314162 |
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| Protein GI | 150377567 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0687] Spermidine/putrescine-binding periplasmic protein |
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| TIGRFAM ID | [TIGR01409] Tat (twin-arginine translocation) pathway signal sequence |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.27299 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCATGA ACAATGACGG GAACTGGTCG CGCAGGCGGT TCCTGAAAAC CACCGCGATC
GGAGCTGCAG CACTTTCAAG TCCGGCAATT TGGACCTCGG CGAGGGCGCA GGGCAAGCGC
ATCATCGTCC GCGACGATGG CGGCATCTAC ACGAAGGCCT ATAACGCCGT GTACTACGGC
CCCTTCAAGG AAGCGACCGG CATCGAGGTG GTCGGCGTTC AGGCCAATGC CGAACCGACG
GCGCAAATTA AATCGATGGT CGACGCGGGC TCCTATACCT GGGACATGGC AAAGATCAGC
GAACCTGCAA TCGAGCTCCT GACCGACGGC GAGAAGAAAT ACCTCGAGCA ACATGGGCTT
GGCAGTGAAG CGGCGATCGC AAGCCTTCCA AAGCAGTATC TGTCTGACTA CGGCGTCGGA
ACCAACGTAT ATACCACGGT GCTCGCCTAC CGTTCGGACG CGTTCGAAGG ACAGGACGCG
CCGAAATCGT GGGCCGATTT CTACGACGTC GCGAAGTATC CGGGCAGGCG CGCTTTGCGC
AAGCATCCTT TCGATACGAT CGAACAGGCA CTGATGGCAG ATGGCGTGCC GGTGGCGAAC
GTGTATCCGT GCGACGTCGA CCGCGCGTTC AAAAAGCTCG ACACGATCAA GAGCGACGTA
GAAGTATTTT GGACGAGTGG CGCTCAGGTC GAGCAGATGC TGATCTCCGG CGAAGTCGAT
ATGATCCCGA CCTGGGTTTC GCGTGCGCAG GCTGCACGGT CGGCGGGGGC GCCGGTCGAG
ATCGTCTGGG ATCAGAATAT CTGGGGCCTC GACAGCTGGG CGATCCTTGC CGGTACCCCC
AACGCGGATG CATGCCGCGA ATTCATCAAG TTCGCATCCG ATCCGAAACG GCAGGCAGCC
CTTGTGGATT ATTTCCCCGC AGGCGTCACG CAGCCGGCGG CGTTCGACGA CATCGATCCG
AAGATCGCAA AAGATTGCCC GACGTTCCCG GAACACATCA AGCGCGGTGT GAAGATCGAC
GCCAAGTACT GGTTTGCAAA TCAGGCACAA GTCATCGAAC GTTACAATTC TTGGCTCGTG
AGCTGA
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| Protein sequence | MSMNNDGNWS RRRFLKTTAI GAAALSSPAI WTSARAQGKR IIVRDDGGIY TKAYNAVYYG
PFKEATGIEV VGVQANAEPT AQIKSMVDAG SYTWDMAKIS EPAIELLTDG EKKYLEQHGL
GSEAAIASLP KQYLSDYGVG TNVYTTVLAY RSDAFEGQDA PKSWADFYDV AKYPGRRALR
KHPFDTIEQA LMADGVPVAN VYPCDVDRAF KKLDTIKSDV EVFWTSGAQV EQMLISGEVD
MIPTWVSRAQ AARSAGAPVE IVWDQNIWGL DSWAILAGTP NADACREFIK FASDPKRQAA
LVDYFPAGVT QPAAFDDIDP KIAKDCPTFP EHIKRGVKID AKYWFANQAQ VIERYNSWLV
S
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