| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_5274 |
|---|
| Symbol | |
|---|
| ID | 5319576 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sinorhizobium medicae WSM419 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009621 |
|---|
| Strand | - |
|---|
| Start bp | 232048 |
|---|
| End bp | 232992 |
|---|
| Gene Length | 945 bp |
|---|
| Protein Length | 314 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 640777051 |
|---|
| Product | LysR family transcriptional regulator |
|---|
| Protein accession | YP_001313983 |
|---|
| Protein GI | 150377388 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGACCTTT CAGTAATCGA TTGTTTCGTG AAGGTGGCGG ATGCAAGGTC GATTTCGGCA
GCATCGCGCC TGCATCGGCT GCCGAAGTCG ACCCTTAGCC ACCGCATCCG GCAACTGGAA
GACCAATTCG GTGTCGAGCT GTTCGTGCGC GAGGGCCATC AGCTGCACCT GACCGATGCC
GGCTCGGAAC TCCTGCGCCA TGCGCGGAAG ATTCGGACGA GCTGCGACGA TGCGGCCACC
GCAATGGCCG AGATGCACAA GGAGGTGGCG GGAACGCTCA GGGTCGGCTC GACGGGCGAG
TTCGGCACCA CCGTCACCTC CGAACTGCTT TACGCCTTTC AGATGAAGTA TCCGCAGGTC
ATCCTCGACG TCGTGTTCCT CTCCGCCCGC CAGCCGTTCA CCGACGTTTC CGACATGGCG
CTGGACGGTA TCTTTCATTG GGGCGAGCCA TCCGACGTCG ACTATGTCAG CCGCCGGCTG
GCAACGGCTT CCTACGGCCT CTATGCCAGC CCCGATTATC TGGCTCAGCA CGATCAACCG
GCAAGCGAAG CCGAACTGGC GCGCCACCGG GGCCTGATCT TTCGCAGCAC GACGAGGTTG
CAGCCCTGGT ACCTTTCTCG GCCGGGCGGA CCGGAGACGG AAATCCTGCT CACGGCCGCG
CTGACGGCGA ACGACTACTG GACCCTCAAA TATTTCGCCG TCGCCGGACA GGGCATCGCC
TATCTCCCGG GCTTCTTCGT CGAAACGGAG TGCCAGAGCG GGCTTTTGGT GCCCGTCCTT
GCGGAATGGC GGTCGCGCGA AACGGCAATC AACCTTATCT ATTCGCGGCG GCGGCACGTT
TCCCGCCGAT TCAAGGCCTT TGTGGGTTTT TGCGTGGAGT TCTACCGCCG ACGCGAACGC
GACCAGATCC CGCGCTATTT CGTCGAGAAG ATCGCGCGTG AATAG
|
|---|
| Protein sequence | MDLSVIDCFV KVADARSISA ASRLHRLPKS TLSHRIRQLE DQFGVELFVR EGHQLHLTDA
GSELLRHARK IRTSCDDAAT AMAEMHKEVA GTLRVGSTGE FGTTVTSELL YAFQMKYPQV
ILDVVFLSAR QPFTDVSDMA LDGIFHWGEP SDVDYVSRRL ATASYGLYAS PDYLAQHDQP
ASEAELARHR GLIFRSTTRL QPWYLSRPGG PETEILLTAA LTANDYWTLK YFAVAGQGIA
YLPGFFVETE CQSGLLVPVL AEWRSRETAI NLIYSRRRHV SRRFKAFVGF CVEFYRRRER
DQIPRYFVEK IARE
|
|---|
| |